View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_33 (Length: 226)
Name: NF8106_low_33
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3046207 - 3046411
Alignment:
| Q |
1 |
acattacatcaatcatacctagtggaaagacacacgtctttctccgcttccataaattaactacaatcattgagcttccaaatatggaagacttccttca |
100 |
Q |
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| T |
3046207 |
acattacatcaatcataactagtggaaagacgcacgtctttcttcgcttccataaattaactacaatcattgagcttccaaatatggaagtcttccttca |
3046306 |
T |
|
| Q |
101 |
tccaaccaaatcgagattcattcttcccatcatatattccaagaacatctaactaacggaatgatatcctttctcaaaatccaccttcactaacaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3046307 |
tccaaccaaatcgagattcattcttcccatcatatattcc----------aactaacggaatcatatcctttctcaaaatccaccttcactaacaaacac |
3046396 |
T |
|
| Q |
201 |
ccttttctacttctt |
215 |
Q |
| |
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||||||||||||||| |
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| T |
3046397 |
ccttttctacttctt |
3046411 |
T |
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