View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_low_5 (Length: 390)

Name: NF8106_low_5
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_low_5
NF8106_low_5
[»] scaffold0027 (1 HSPs)
scaffold0027 (20-377)||(18133-18489)
[»] chr1 (6 HSPs)
chr1 (20-377)||(51719548-51719902)
chr1 (105-150)||(50138025-50138070)
chr1 (188-231)||(50138085-50138128)
chr1 (21-69)||(50137906-50137954)
chr1 (105-140)||(43316528-43316564)
chr1 (105-140)||(50950316-50950352)
[»] chr8 (1 HSPs)
chr8 (20-377)||(43942657-43943022)
[»] chr3 (3 HSPs)
chr3 (105-158)||(52175245-52175298)
chr3 (105-150)||(52173279-52173324)
chr3 (316-371)||(52175030-52175084)
[»] chr2 (4 HSPs)
chr2 (105-150)||(33474864-33474909)
chr2 (188-231)||(33474924-33474967)
chr2 (21-69)||(33474745-33474793)
chr2 (309-377)||(33475045-33475112)
[»] chr7 (5 HSPs)
chr7 (105-150)||(11695802-11695847)
chr7 (188-231)||(11695862-11695905)
chr7 (105-144)||(34369319-34369358)
chr7 (21-72)||(11695683-11695734)
chr7 (309-377)||(11695983-11696050)
[»] scaffold0047 (1 HSPs)
scaffold0047 (309-377)||(50528-50595)


Alignment Details
Target: scaffold0027 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 18489 - 18133
Alignment:
Q  20 gtactctggcagatattaagaaaagaatgtggtattgttgtggtggtttttcagagctaaagatctgaattttttggnnnnnnnn-ttggtgaagatgaa 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||         |||||||| |||||    
T  18489 gtactctggcagatattaagaaaagaatgtggtactgttgtggtggtttttcagatctaaagatctgaaatttttggaagaaaaaattggtgaatatgaa 18390  T
Q  119 gattctttgaagaacacatgaataatattaattttgttttttggttactttaatagtatannnnnnnnnggtacagtttaatagtttatgtttagttaaa 218  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  18389 gattctttaaagaacacatgaataatattagttttgttttttggttactttaatagtat--ttttttttggtacagtttaatagtttatgtttagttaaa 18292  T
Q  219 gaaataatcctatnnnnnnnngccaaaatctatctacacgataatctccataaaatgccatttccaacttttattataattacggaaatgttcagacgtg 318  Q
    |||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18291 gaaataatcctatcaaaaaaagccaaaatctatctacacgttaatctccataaaatgccatttccaacttttattataattacggaaatgttcagatgtg 18192  T
Q  319 gggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  18191 gggtcactatttttgttgttggtacaatatcaaaaaagttggtaataggtaaccggtct 18133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 51719902 - 51719548
Alignment:
Q  20 gtactctggcagatattaagaaaagaatgtggtattgttgtggtggtttttcagagctaaagatctgaattttttggnnnnnnnn-ttggtgaagatgaa 118  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||         |||||||| |||||    
T  51719902 gtactctggcaaatattaagaaaagaatgtggtactcttgtggtggtttttcagatctaaagatctgaaatttttggaagaaaaaattggtgaatatgaa 51719803  T
Q  119 gattctttgaagaacacatgaataatattaattttgttttttggttactttaatagtatannnnnnnnnggtacagtttaatagtttatgtttagttaaa 218  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||          |||||||||||||||||||||||||||||||    
T  51719802 gattctttgaagaacacatgaataatattagttttgttttt-ggttactttaatagtat---tttttttggtacagtttaatagtttatgtttagttaaa 51719707  T
Q  219 gaaataatcctatnnnnnnnngccaaaatctatctacacgataatctccataaaatgccatttccaacttttattataattacggaaatgttcagacgtg 318  Q
    |||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51719706 gaaataatcctatcaaaaaaagccaaaatctatctacacgttaatctccataaaatgccatttccaacttttattataattacggaaatgttcagatgtg 51719607  T
Q  319 gggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  51719606 gggtcactatttttgttgttggtacaatagcaaaaaagttggtaataggtaaccggtct 51719548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 50138025 - 50138070
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataatattaat 150  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  50138025 ttggtaaagatgaagattctttgaagaacacatgaataatattaat 50138070  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 50138085 - 50138128
Alignment:
Q  188 ggtacagtttaatagtttatgtttagttaaagaaataatcctat 231  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  50138085 ggtacagtttaataatttatttttagttaaagaaataatcctat 50138128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 50137906 - 50137954
Alignment:
Q  21 tactctggcagatattaagaaaagaatgtggtattgttgtggtggtttt 69  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||||||    
T  50137906 tactttggcagatattaagaaaaggatgtggtaaggttgtggtggtttt 50137954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 43316564 - 43316528
Alignment:
Q  105 ttggtgaagatgaagattc-tttgaagaacacatgaa 140  Q
    ||||||||||||||||||| |||||||||||||||||    
T  43316564 ttggtgaagatgaagattcttttgaagaacacatgaa 43316528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 50950352 - 50950316
Alignment:
Q  105 ttggtgaagatgaagatt-ctttgaagaacacatgaa 140  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50950352 ttggtgaagatgaagattcctttgaagaacacatgaa 50950316  T

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Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 43942657 - 43943022
Alignment:
Q  20 gtactctggcagatattaagaaaagaatgtggtattgttgtggtggtttttcagagctaaagatctgaa-ttttttggnnnnnnnn-ttggtgaagatga 117  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||| ||||||| ||||||||         |||||||||||||    
T  43942657 gtactctggcagatattaagaaaaggatgtggtactgttgtggtggttttccagatctaaaaatctgaaattttttggaagaaaaaattggtgaagatga 43942756  T
Q  118 agattctttgaagaacacatgaataatattaattttgttttttggttactttaatagtatannnnnnnnnggtacagtttaatagtttatgtttagttaa 217  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||          ||||||||||||||| ||||||||||||||    
T  43942757 agattctttgaagaacacatgaataatattaatttt---ttttggttactttaatagtat--ttttttttggtacagtttaatagcttatgtttagttaa 43942851  T
Q  218 agaaataatcctatnnnnnnnngccaaaatctatctacacg------------ataatctccataaaatgccatttccaacttttattataattacggaa 305  Q
    ||||||||||||||        |||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||| |||||||    
T  43942852 agaaataatcctatcaaaaaaagccaaaatctatctacacgttaaaataatttataatctccataaaatgccatttccaacttttattataaatacggaa 43942951  T
Q  306 atgttcagacgtggggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  43942952 atgttcagaggtggggtcattatttttgttgttggtacaataac-aaaaggttggtaataggtaaccggtct 43943022  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 52175298 - 52175245
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataatattaattttgtttt 158  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  52175298 ttggtgaagatgaagattctttaaagaacacatgaataatattaatattgtttt 52175245  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 52173324 - 52173279
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataatattaat 150  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  52173324 ttggtgaagatgaagattctttaaagaacacatgaataatattaat 52173279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 52175084 - 52175030
Alignment:
Q  316 gtggggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaac 371  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||    
T  52175084 gtggggtcactatttttgttgttggtacaatgac-aaaaagttgatagtagataac 52175030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 33474864 - 33474909
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataatattaat 150  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33474864 ttggtaaagatgaagattctttgaagaacacatgaataatattaat 33474909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 33474924 - 33474967
Alignment:
Q  188 ggtacagtttaatagtttatgtttagttaaagaaataatcctat 231  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  33474924 ggtacagtttaataatttatttttagttaaagaaataatcctat 33474967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 33474745 - 33474793
Alignment:
Q  21 tactctggcagatattaagaaaagaatgtggtattgttgtggtggtttt 69  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||||||    
T  33474745 tactttggcagatattaagaaaaggatgtggtaaggttgtggtggtttt 33474793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 33475045 - 33475112
Alignment:
Q  309 ttcagacgtggggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    |||||| |||||||  || |||||||| |||||||||| ||||||| |||| ||||| |||||||||||    
T  33475045 ttcagaggtggggttgctgtttttgtttttggtacaatgacaaaaa-gttggtaataagtaaccggtct 33475112  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 11695802 - 11695847
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataatattaat 150  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||    
T  11695802 ttggtaaagatgaagattctttaaagaacacatgaataatattaat 11695847  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 11695862 - 11695905
Alignment:
Q  188 ggtacagtttaatagtttatgtttagttaaagaaataatcctat 231  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  11695862 ggtacagtttaataatttatttttagttaaagaaataatcctat 11695905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 34369319 - 34369358
Alignment:
Q  105 ttggtgaagatgaagattctttgaagaacacatgaataat 144  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  34369319 ttggtgaagatgaagattctttaaagaacacatgaataat 34369358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 11695683 - 11695734
Alignment:
Q  21 tactctggcagatattaagaaaagaatgtggtattgttgtggtggtttttca 72  Q
    |||| |||| |||||||||||||| ||||||||  |||||||||||||||||    
T  11695683 tactttggctgatattaagaaaaggatgtggtaaggttgtggtggtttttca 11695734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 11695983 - 11696050
Alignment:
Q  309 ttcagacgtggggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    |||||| |||||||  || |||||||| |||||||||| ||||||| |||| ||||| |||||||||||    
T  11695983 ttcagaggtggggttgctctttttgtttttggtacaatgacaaaaa-gttggtaataagtaaccggtct 11696050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 50595 - 50528
Alignment:
Q  309 ttcagacgtggggtcactatttttgttgttggtacaataacaaaaaagttgataataggtaaccggtct 377  Q
    |||||| |||||||  || |||||||| |||||||||| ||||||| |||| ||||| |||||||||||    
T  50595 ttcagaggtggggttgctgtttttgtttttggtacaatgacaaaaa-gttggtaataagtaaccggtct 50528  T

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