View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_low_6 (Length: 382)

Name: NF8106_low_6
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_low_6
NF8106_low_6
[»] chr3 (30 HSPs)
chr3 (13-266)||(27077989-27078244)
chr3 (13-266)||(27083786-27084041)
chr3 (124-266)||(44682216-44682358)
chr3 (124-266)||(6515290-6515432)
chr3 (124-266)||(45713805-45713947)
chr3 (124-266)||(8814407-8814549)
chr3 (124-266)||(42370888-42371030)
chr3 (124-238)||(39499494-39499608)
chr3 (148-252)||(6746615-6746719)
chr3 (148-253)||(6475220-6475326)
chr3 (302-367)||(45713983-45714048)
chr3 (302-366)||(27077889-27077953)
chr3 (302-366)||(27083686-27083750)
chr3 (124-236)||(34948223-34948335)
chr3 (302-367)||(6475342-6475407)
chr3 (302-367)||(44682394-44682459)
chr3 (204-265)||(93507-93568)
chr3 (302-367)||(6515468-6515533)
chr3 (302-367)||(6746533-6746598)
chr3 (302-367)||(8814585-8814650)
chr3 (302-355)||(22896691-22896744)
chr3 (204-265)||(30991745-30991806)
chr3 (148-228)||(30860397-30860477)
chr3 (192-250)||(49080774-49080832)
chr3 (302-353)||(27065476-27065527)
chr3 (178-230)||(27731504-27731556)
chr3 (306-358)||(39905339-39905391)
chr3 (302-342)||(42370823-42370863)
chr3 (302-351)||(25891574-25891623)
chr3 (317-366)||(30991856-30991905)
[»] chr2 (20 HSPs)
chr2 (124-266)||(3670708-3670850)
chr2 (126-264)||(13829172-13829310)
chr2 (124-266)||(31659382-31659524)
chr2 (148-266)||(6831501-6831620)
chr2 (178-266)||(10862899-10862987)
chr2 (302-367)||(6831413-6831478)
chr2 (204-266)||(14798846-14798908)
chr2 (124-206)||(23386853-23386935)
chr2 (124-230)||(30712166-30712272)
chr2 (302-367)||(13829678-13829743)
chr2 (302-367)||(31659559-31659624)
chr2 (302-366)||(10862801-10862865)
chr2 (124-204)||(44021269-44021349)
chr2 (317-367)||(3670608-3670658)
chr2 (178-253)||(9792177-9792253)
chr2 (302-366)||(14798945-14799009)
chr2 (178-226)||(16242297-16242345)
chr2 (178-251)||(13293870-13293943)
chr2 (180-235)||(36911346-36911401)
chr2 (302-364)||(36911431-36911493)
[»] chr8 (30 HSPs)
chr8 (124-266)||(8624947-8625089)
chr8 (124-266)||(13474797-13474939)
chr8 (124-247)||(4203150-4203273)
chr8 (147-266)||(44374520-44374639)
chr8 (148-266)||(1565858-1565976)
chr8 (124-266)||(9479055-9479197)
chr8 (124-263)||(42443333-42443471)
chr8 (124-265)||(14124336-14124477)
chr8 (158-266)||(38776353-38776461)
chr8 (302-367)||(1566012-1566077)
chr8 (302-367)||(13474696-13474761)
chr8 (302-367)||(9479233-9479298)
chr8 (204-262)||(3469113-3469171)
chr8 (204-262)||(42906949-42907007)
chr8 (178-260)||(34347499-34347581)
chr8 (302-367)||(4203318-4203383)
chr8 (197-251)||(15438390-15438445)
chr8 (197-251)||(15529694-15529749)
chr8 (317-367)||(19238364-19238414)
chr8 (317-367)||(19311548-19311598)
chr8 (302-367)||(44374419-44374484)
chr8 (298-341)||(8625121-8625164)
chr8 (317-366)||(3469011-3469060)
chr8 (302-367)||(38776499-38776563)
chr8 (298-358)||(40302346-40302406)
chr8 (179-229)||(6149095-6149145)
chr8 (304-358)||(34347614-34347668)
chr8 (319-352)||(42443288-42443321)
chr8 (317-366)||(42907060-42907109)
chr8 (178-222)||(30806038-30806082)
[»] chr6 (9 HSPs)
chr6 (124-266)||(18053509-18053651)
chr6 (178-266)||(13865857-13865945)
chr6 (124-230)||(6851868-6851974)
chr6 (178-266)||(33483460-33483548)
chr6 (302-367)||(18053408-18053473)
chr6 (180-230)||(20240079-20240129)
chr6 (180-230)||(22134063-22134113)
chr6 (180-230)||(22141416-22141466)
chr6 (178-230)||(31730506-31730557)
[»] chr4 (15 HSPs)
chr4 (124-266)||(34041913-34042055)
chr4 (124-266)||(34293223-34293365)
chr4 (192-266)||(1688057-1688131)
chr4 (178-263)||(24830987-24831072)
chr4 (124-219)||(7017084-7017178)
chr4 (302-363)||(7017248-7017309)
chr4 (302-367)||(34293398-34293463)
chr4 (192-259)||(15478120-15478186)
chr4 (302-358)||(1687966-1688022)
chr4 (302-366)||(53732289-53732353)
chr4 (317-366)||(23996268-23996317)
chr4 (302-351)||(34041829-34041878)
chr4 (302-366)||(46798844-46798908)
chr4 (124-188)||(8434488-8434556)
chr4 (178-228)||(47786308-47786358)
[»] chr1 (31 HSPs)
chr1 (136-266)||(37553176-37553306)
chr1 (124-266)||(49901362-49901503)
chr1 (124-266)||(13413950-13414092)
chr1 (126-266)||(30694364-30694504)
chr1 (128-265)||(508592-508722)
chr1 (173-266)||(36018038-36018131)
chr1 (298-367)||(13413849-13413918)
chr1 (137-228)||(34503680-34503771)
chr1 (302-367)||(508490-508555)
chr1 (192-261)||(10920644-10920713)
chr1 (204-265)||(29119200-29119261)
chr1 (204-265)||(35760352-35760413)
chr1 (204-265)||(46435314-46435375)
chr1 (181-253)||(3979733-3979805)
chr1 (302-357)||(30694540-30694595)
chr1 (178-248)||(46835130-46835200)
chr1 (204-265)||(27055811-27055872)
chr1 (178-266)||(32708893-32708979)
chr1 (302-367)||(37553342-37553407)
chr1 (305-367)||(49901542-49901604)
chr1 (302-366)||(36018167-36018231)
chr1 (173-249)||(24656510-24656589)
chr1 (317-366)||(27055928-27055977)
chr1 (317-366)||(29119100-29119149)
chr1 (317-366)||(46435214-46435263)
chr1 (302-358)||(52594868-52594924)
chr1 (193-244)||(24656371-24656422)
chr1 (178-228)||(26214010-26214060)
chr1 (317-366)||(35760252-35760301)
chr1 (302-366)||(46832717-46832782)
chr1 (302-358)||(32708801-32708857)
[»] chr7 (18 HSPs)
chr7 (124-266)||(9963952-9964093)
chr7 (148-266)||(1507529-1507647)
chr7 (148-266)||(23102644-23102762)
chr7 (178-266)||(9158701-9158789)
chr7 (124-263)||(24790966-24791103)
chr7 (178-266)||(2658463-2658550)
chr7 (302-367)||(1507428-1507493)
chr7 (298-367)||(24790862-24790931)
chr7 (178-266)||(1398221-1398310)
chr7 (302-366)||(2658362-2658426)
chr7 (178-266)||(33473614-33473702)
chr7 (302-351)||(23102798-23102847)
chr7 (323-367)||(9963856-9963900)
chr7 (298-367)||(47412993-47413062)
chr7 (318-366)||(10982395-10982443)
chr7 (302-336)||(43439415-43439449)
chr7 (302-366)||(9158601-9158665)
chr7 (302-366)||(33473738-33473802)
[»] scaffold0006 (2 HSPs)
scaffold0006 (124-266)||(280486-280628)
scaffold0006 (302-367)||(280385-280450)
[»] chr5 (16 HSPs)
chr5 (142-266)||(28867874-28867996)
chr5 (126-229)||(15145402-15145505)
chr5 (302-367)||(9514606-9514671)
chr5 (193-266)||(9514707-9514780)
chr5 (178-266)||(36896723-36896811)
chr5 (178-254)||(26637526-26637602)
chr5 (178-253)||(18933447-18933522)
chr5 (304-367)||(36896849-36896912)
chr5 (192-265)||(39057973-39058046)
chr5 (304-367)||(28867773-28867836)
chr5 (204-265)||(18014332-18014393)
chr5 (302-366)||(39057866-39057930)
chr5 (205-262)||(14149038-14149094)
chr5 (317-366)||(14149147-14149196)
chr5 (317-366)||(18014232-18014281)
chr5 (306-358)||(26637442-26637494)
[»] scaffold1532 (2 HSPs)
scaffold1532 (124-266)||(1461-1603)
scaffold1532 (301-367)||(1360-1426)
[»] scaffold0002 (2 HSPs)
scaffold0002 (178-265)||(452814-452901)
scaffold0002 (302-366)||(452713-452777)
[»] scaffold0778 (1 HSPs)
scaffold0778 (302-363)||(3542-3603)
[»] scaffold0538 (1 HSPs)
scaffold0538 (196-230)||(3981-4015)
[»] scaffold0193 (1 HSPs)
scaffold0193 (302-352)||(23071-23121)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 27078244 - 27077989
Alignment:
Q  13 tatgtgacaaaatgtctttaatcagcaatgaagaaagggaaatannnnnnnnc------tttctgtcttctcaagtttgggttggtgtgttgtaggaata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||| ||||    
T  27078244 tatgtgacaaaatgtctttaatcagcaatgaagaaagggaaatgtttttttttctttcttttctgtcttctcaagtttgggttggtgtgttgtagcaata 27078145  T
Q  107 tatatatacacacacatttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaa 206  Q
    ||||    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  27078144 tata----cacacacattcatttacactcatttttataagtattattaaggtgcaagttagcaacattcactaatttacatcaattttcatcattccaaa 27078049  T
Q  207 tattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  27078048 tattgtttcattaaaagtttgtctttattatatgttttgtaccttaagcatgtcattgtc 27077989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 27084041 - 27083786
Alignment:
Q  13 tatgtgacaaaatgtctttaatcagcaatgaagaaagggaaatannnnnnnnc------tttctgtcttctcaagtttgggttggtgtgttgtaggaata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||| ||||    
T  27084041 tatgtgacaaaatgtctttaatcagcaatgaagaaagggaaatgtttttttttctttcttttctgtcttctcaagtttgggttggtgtgttgtagcaata 27083942  T
Q  107 tatatatacacacacatttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaa 206  Q
    ||||    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  27083941 tata----cacacacattcatttacactcatttttataagtattattaaggtgcaagttagcaacattcactaatttacatcaattttcatcattccaaa 27083846  T
Q  207 tattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  27083845 tattgtttcattaaaagtttgtctttattatatgttttgtaccttaagcatgtcattgtc 27083786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 44682216 - 44682358
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  44682216 ttatttacactcatttttacaagtattattaaggtgcaagttagcaaccttcactaatttacacccattttcatcattccaaatattgtttccttaaaag 44682315  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  44682316 tttgtctttattacatgtttagtaccttaatcatgtcattgtc 44682358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 6515290 - 6515432
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||  | ||||||||||||||||||| ||||||||||||    
T  6515290 ttatttacactcatttttataagtattattaaggtgcaagttagcaaccttcactaatttacactcactttcatcatttcaaatattatttccttaaaag 6515389  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  6515390 tttgtctttattacatgttttgtatcttaagcatgtcattgtc 6515432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 45713805 - 45713947
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||  |||| |||||||||   | |||||||||| |||||||||||||||||||||    
T  45713805 ttatttacacttatttttataagtattattaaggtgtaagttagcaatcttcactaatttacattcactttcatcattccaaatattgtttccttaaaag 45713904  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45713905 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 45713947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 8814407 - 8814549
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||| | |||||||||| ||||||||| |||||||||||    
T  8814407 ttatttacactcatttttataagtattattaaggtgcaagttagcaaccttcactaatttacacccactttcatcattccaaatattgcttccttaaaag 8814506  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||| ||||||||||||||||||||| ||||  |||||||||||    
T  8814507 tttatctttattacatgttttgtactttaagtatgtcattgtc 8814549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 42371030 - 42370888
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||  | |||||||||| |||||||| |||| |||||||    
T  42371030 ttatttacactcatttttataagtattattaagatgcaagttagcaaccttcactaatttacactcactttcatcattccaaatattatttcgttaaaag 42370931  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||    
T  42370930 tttgtctttattacatgttttgtacattaagcatgttattgtc 42370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 39499494 - 39499608
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||| ||||||||    
T  39499494 ttatttacactcatttttataagtattattaaggtgcaagttagcaaccttcactaatttacacccactttcatcatttcaaatattgttttcttaaaag 39499593  T
Q  224 tttgtctttattaca 238  Q
    |||||||||||||||    
T  39499594 tttgtctttattaca 39499608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 6746719 - 6746615
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgta 247  Q
    ||||||||| ||||||||| |||  |||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6746719 attattaaggtgcaagttaacaatcttcactaatttacacccactttcatcattttaaatattgtttccttaaaagtttgtctttattacatgttttgta 6746620  T
Q  248 cctta 252  Q
    |||||    
T  6746619 cctta 6746615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 6475220 - 6475326
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatg-ttttgt 246  Q
    ||||||||| ||||||||| |||| |||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  6475220 attattaaggtgcaagttaacaaccttcactaatttacacccagtttcatcattccaaatattgtttccttaaaagtttgtctttattacatgtttttgt 6475319  T
Q  247 accttaa 253  Q
    |||||||    
T  6475320 accttaa 6475326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 45713983 - 45714048
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  45713983 tagttacaaaattgtccttctattaaaaattaattagaatataaacaaaagggtgttttagtaaat 45714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 27077953 - 27077889
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27077953 tagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 27077889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 27083750 - 27083686
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27083750 tagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 27083686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 34948223 - 34948335
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||| |  ||||||||||||||||||||    |||||||||||||||| ||||||||||| | || |||||||  ||||||| ||||||||||||    
T  34948223 ttatttacattcttttttataagtattattaagggaaaagttagcaacattcattaatttacacccacttccatcattctaaatattatttccttaaaag 34948322  T
Q  224 tttgtctttatta 236  Q
    ||||||| |||||    
T  34948323 tttgtctctatta 34948335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 6475342 - 6475407
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  6475342 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaat 6475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 44682394 - 44682459
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  44682394 tagttacaaaattgttcttctatttaaaattaattagaatataaacaaaagtgtgttttagtaaat 44682459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 93507 - 93568
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  93507 aaatattgtttccttaaaagtttgtctctattacatgttttataccttaagtatgtcattgt 93568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 6515468 - 6515533
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  6515468 tagttgcaaaattgcccttctatttaaaattaattagaatacaaacaaaagggtgttttagtaaat 6515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 6746598 - 6746533
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  6746598 tagttacaaaattgcccttctatttaaaattaactagaatataaacaaaagagtgttttagtaaat 6746533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 8814585 - 8814650
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  8814585 tagttacaaaattgtcattctatttaaaattaattagaatataaacaaaatggtgttttggtaaat 8814650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 22896691 - 22896744
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggt 355  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  22896691 tagttacaaaactacccttctatttaaaattaattagaatataaacaaaagggt 22896744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 30991745 - 30991806
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  30991745 aaatattatttccttaaaagtttgtctctattacatgttttataccttaagcatgtcattgt 30991806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 30860397 - 30860477
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgt 228  Q
    ||||||||||||||||||| |||| |||| ||||||| | | ||||||||||||  |||||||||||| ||||||||||||    
T  30860397 attattaagatgcaagttaacaaccttcactaatttatatccattttcatcattctaaatattgtttcattaaaagtttgt 30860477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 49080832 - 49080774
Alignment:
Q  192 tttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtacct 250  Q
    |||||||||||||||||||||||| |||||| ||||||  ||||| |||||||||||||    
T  49080832 tttcatcatttcaaatattgtttctttaaaaatttgtccatattatatgttttgtacct 49080774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 27065476 - 27065527
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagg 353  Q
    ||||||||||| ||||||| |||||||| |||||||||||| ||||||||||    
T  27065476 tagttacaaaattgtccttttatttaaatttaattagaatagaaacaaaagg 27065527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 27731556 - 27731504
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||||  | ||||||||||||||||||||||| ||||||||| |||||    
T  27731556 taatttacacacactttcatcatttcaaatattgttttcttaaaagtgtgtct 27731504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 39905339 - 39905391
Alignment:
Q  306 tacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    |||||||||||  || ||||||||||||||| ||||| |||||||||||||||    
T  39905339 tacaaaactgttattttatttaaaattaatttgaatagaaacaaaagggtgtt 39905391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 42370863 - 42370823
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaata 342  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  42370863 tagttacaaaattgcccttctatttaaaattaattagaata 42370823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 25891574 - 25891623
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaa 351  Q
    |||| |||||| |||| ||| |||||||||||||||||||||||| ||||    
T  25891574 tagtaacaaaagtgtcattcaatttaaaattaattagaatataaataaaa 25891623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 30991856 - 30991905
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||| |||||||| |||||||||||| |||||||| |||||| |||||||    
T  30991856 ccttatatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 30991905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 3670850 - 3670708
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||| | ||||||||||||||||||| |||||||||||     
T  3670850 ttatttacacttatttttataagtattattaaggtgcaagttagcaaccttcattaatttacacccagtttcatcatttcaaatattatttccttaaaaa 3670751  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  3670750 tttgtctttattatatgttttgtaccttaagcatgtcattgtc 3670708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 13829172 - 13829310
Alignment:
Q  126 atttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtt 225  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| | | |||||||||| |||||||||||||||||||||||    
T  13829172 atttacactcatttttataagtattattaaggtgcaagttagcaacattcactaatttacatccactttcatcattccaaatattgtttccttaaaagtt 13829271  T
Q  226 tgtctttattacatgttttgtaccttaaacatgtcattg 264  Q
    ||||||||||||| ||| |||||||||| ||||||||||    
T  13829272 tgtctttattacaagttatgtaccttaagcatgtcattg 13829310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 31659382 - 31659524
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||| ||| |||||||||||||||||| || ||||||| |||||| |||| ||||||||||| | |||||||||| ||||||||||| | |||||||    
T  31659382 ttatttatactcatttttataagtattattcaggtgcaagtcagcaaccttcactaatttacacccactttcatcattccaaatattgttactttaaaag 31659481  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  31659482 tttgtctttattatatgttttgtaccttaagcatgtcattgtc 31659524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 6831620 - 6831501
Alignment:
Q  148 attattaagatgcaagttagcaacatt-cagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgt 246  Q
    ||||||||| |||||||||||||| || || ||||||||||| | |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  6831620 attattaaggtgcaagttagcaacctttcactaatttacacccactttcatcattccaaatattgtttctttacaagtttgtctttattacatgttttgt 6831521  T
Q  247 accttaaacatgtcattgtc 266  Q
    ||||||||||||||||||||    
T  6831520 accttaaacatgtcattgtc 6831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 10862987 - 10862899
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  10862987 taatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtccttattacatgttttgtaccttaagcatgtcattgtc 10862899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 6831478 - 6831413
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6831478 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaat 6831413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 14798846 - 14798908
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  14798846 aaatattgtttccttaaaagtttgtctctattacatgttttgtatcttaagcatgtcattgtc 14798908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 23386853 - 23386935
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaa 206  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||| |||| ||||||||| | | |||||||||||||||    
T  23386853 ttatttacactcatttttataagtattattaaagtgcaagttagcaaccttcactaatttacatccactttcatcatttcaaa 23386935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 30712166 - 30712272
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    |||||||||||  ||||||||| |||||||||| ||||||||| |||  |||| ||||||||||  ||||||||||||  |||| ||||||| |||||||    
T  30712166 ttatttacactcctttttataaatattattaaggtgcaagttaacaaacttcattaatttacactcattttcatcattcaaaatgttgtttcattaaaag 30712265  T
Q  224 tttgtct 230  Q
    |||||||    
T  30712266 tttgtct 30712272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 13829678 - 13829743
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13829678 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttagcaaat 13829743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 31659559 - 31659624
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  31659559 tagttacaaaattgcccttctatttaaatttaattagaatataaacaaaagggtgttttagtaaat 31659624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 10862865 - 10862801
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  10862865 tagttacaaaactgcccttctatttaaatttaattagaatagaaacaaaagggtgttttagtaaa 10862801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 44021269 - 44021349
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttca 204  Q
    ||||||||||| |||||||||| |||||||||| || |||||||||||||||| ||| ||||||| | |||||||||||||    
T  44021269 ttatttacactcatttttataaatattattaaggtgtaagttagcaacattcactaaattacacccactttcatcatttca 44021349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 3670658 - 3670608
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3670658 ccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaat 3670608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 9792253 - 9792177
Alignment:
Q  178 taatttacaccaattttcatcatt-tcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaa 253  Q
    ||||||||| | | |||||||||| | ||||||||||| |||| ||||||||| |||||||||| ||||||||||||    
T  9792253 taatttacatccactttcatcattctaaaatattgttttcttataagtttgtccttattacatgctttgtaccttaa 9792177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 14798945 - 14799009
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||| |||| | |||| |||||||    
T  14798945 tagttacaaaactgcccttctatttaaatttaattagaatagaaataaaatgatgttttagtaaa 14799009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 16242345 - 16242297
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagttt 226  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  16242345 taatttacatccattttcatcatttcaaatattgtttcattaaaagttt 16242297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 13293870 - 13293943
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtacctt 251  Q
    ||||||||||  ||||| |||||| || |||||||||||||||| ||||||| |||||||   |||||||||||    
T  13293870 taatttacacacatttttatcattccagatattgtttccttaaatgtttgtcattattactaattttgtacctt 13293943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 36911346 - 36911401
Alignment:
Q  180 atttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttatt 235  Q
    ||||||||| | ||||||||||  ||||||||||||||| ||||||||||| ||||    
T  36911346 atttacacccactttcatcattcaaaatattgtttccttcaaagtttgtctctatt 36911401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 36911431 - 36911493
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagta 364  Q
    |||||||||||||| | || |||||||| |||||||||||| |||||||| | |||| |||||    
T  36911431 tagttacaaaactgccattttatttaaatttaattagaatagaaacaaaaagatgttttagta 36911493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 8624947 - 8625089
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||| |||| ||||||||||  | |||||| ||| |||||||||||||||||||||    
T  8624947 ttatttacactcatttttataagtattattaaggtgcaagttagaaaccttcactaatttacactcactttcattattccaaatattgtttccttaaaag 8625046  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  8625047 tttgtctttattacatgttttgtaccttaagcatgtcattgtc 8625089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 13474939 - 13474797
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||||| || ||||| |||||||||||||| |||| ||||||||||| | ||| ||||||||||||||||||||| ||||||    
T  13474939 ttatttacactcatttttataagtgttcttaaggtgcaagttagcaaccttcaataatttacacccacttttatcatttcaaatattgtttccataaaag 13474840  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  13474839 tttgtctttattacatgttttgtaccttaagcatgtcattgtc 13474797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 4203150 - 4203273
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  4203150 ttatttacactcatttttataagtattattaaggtgcaagttaacaactttcactaatttacacccactttcatcatttcaaatattgtttccttaaaag 4203249  T
Q  224 tttgtctttattacatgttttgta 247  Q
    |||||||||||||||||| |||||    
T  4203250 tttgtctttattacatgtattgta 4203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 44374639 - 44374520
Alignment:
Q  147 tattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgt 246  Q
    |||||||||| ||||| |||||||| |||| ||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  44374639 tattattaaggtgcaaattagcaaccttcactaatttacacccactttcatcattccaaatattatttccttaaaagtttgtctttattacatgttttgt 44374540  T
Q  247 accttaaacatgtcattgtc 266  Q
    ||||||||||||||||||||    
T  44374539 accttaaacatgtcattgtc 44374520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 1565858 - 1565976
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgta 247  Q
    ||||||||| |||||||||| ||| |||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1565858 attattaaggtgcaagttagtaaccttcactaatttacacccactttcatcattccaaatattgtttccttaaaagtttgtctttattacatgttttgta 1565957  T
Q  248 ccttaaacatgtcattgtc 266  Q
    |||||| ||||||||||||    
T  1565958 ccttaagcatgtcattgtc 1565976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 9479055 - 9479197
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||| |||| ||||| ||||| | |||||||||| |||||||||||||||||||||    
T  9479055 ttatttacacttatttttataagtattataaaggtgcaagttagcaaccttcactaattaacacccactttcatcattccaaatattgtttccttaaaag 9479154  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    | ||||||||| | ||||||| |||||||| ||||||||||||    
T  9479155 tctgtctttatcatatgttttataccttaagcatgtcattgtc 9479197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 42443471 - 42443333
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| | | ||| |||||| |||||||| ||||||||||||    
T  42443471 ttatttacactcatttttataagtattattaaggtgcaagttagcaaccttcactaatttacatccacttttatcattccaaatattatttccttaaaag 42443372  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcatt 263  Q
    |||||||||||| ||||||||||| ||||| |||||||||    
T  42443371 tttgtctttattgcatgttttgta-cttaagcatgtcatt 42443333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 14124477 - 14124336
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||| ||||||||||  | |||||||||| |||||||||||| ||| ||||    
T  14124477 ttatttacactcatttttataagtattattaagatgcaagttagcaaacttcactaatttacactcactttcatcattccaaatattgttttcttgaaag 14124378  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||| ||  ||||||||||||||| |||||| |||| ||||||    
T  14124377 tttatccatattacatgttttgtcccttaagcatgccattgt 14124336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 38776353 - 38776461
Alignment:
Q  158 tgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacat 257  Q
    |||||||||||||| |||| | ||||||| | | ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  38776353 tgcaagttagcaaccttcactgatttacatctactttcatcattttaaatattgtttctttaaaagtttgtctttattatatgttttgtaccttaaacat 38776452  T
Q  258 gtcattgtc 266  Q
    |||||||||    
T  38776453 gtcattgtc 38776461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 1566012 - 1566077
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  1566012 tagttacaaaattgtccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaat 1566077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 13474761 - 13474696
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13474761 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttctagtaaat 13474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 9479233 - 9479298
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  9479233 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaat 9479298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 3469171 - 3469113
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcat 262  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  3469171 aaatattgtttccttaaaagtttgtctctattacatgttttataccttaagcatgtcat 3469113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 42906949 - 42907007
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcat 262  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  42906949 aaatattgtttccttaaaagtttgtctctattacatgttttataccttaagcatgtcat 42907007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 34347499 - 34347581
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtc 260  Q
    ||||||||||| | ||||||||||  || ||||||||| |||||||||||||| ||||| ||||||||||| |||| ||||||    
T  34347499 taatttacacccactttcatcattctaagtattgtttcattaaaagtttgtctctattatatgttttgtactttaagcatgtc 34347581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 4203318 - 4203383
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  4203318 tagtcacaaaattgtcattctatttaaaattaattaaaatataaacaaaaaggtgttttagtaaat 4203383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 15438390 - 15438445
Alignment:
Q  197 tcatttcaaatattgtttccttaaaagtttgtctttattacatgttt-tgtacctt 251  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15438390 tcattccaaatattgtttccttaaaagtttatctttattacatgtttgtgtacctt 15438445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 15529694 - 15529749
Alignment:
Q  197 tcatttcaaatattgtttccttaaaagtttgtctttattacatgttt-tgtacctt 251  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15529694 tcattccaaatattgtttccttaaaagtttatctttattacatgtttgtgtacctt 15529749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 19238414 - 19238364
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  19238414 ccttctattaaaaattaattagaatataaacaaaatggtgttttagtaaat 19238364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 19311598 - 19311548
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  19311598 ccttctattaaaaattaattagaatataaacaaaatggtgttttagtaaat 19311548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 44374484 - 44374419
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |||  |||||||||||||||||||||||||||| ||||| || || ||||||||    
T  44374484 tagttacaaaattgtatttctatttaaaattaattagaatataaaaaaaagagtattttagtaaat 44374419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 8625121 - 8625164
Alignment:
Q  298 aagttagttacaaaactgtccttctatttaaaattaattagaat 341  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  8625121 aagttagttacaaaattgcccttctatttaaaattaattagaat 8625164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 3469060 - 3469011
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  3469060 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 3469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 38776499 - 38776563
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |  ||||| ||||||||||||||||||||||||| |||| ||||| ||||||||    
T  38776499 tagttacaaaattacccttcaatttaaaattaattagaatataaac-aaagagtgttttagtaaat 38776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 40302346 - 40302406
Alignment:
Q  298 aagttagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    |||||||||||||||||   ||||| |||||||||||||  |||||| |||||||||||||    
T  40302346 aagttagttacaaaactactcttctttttaaaattaatttaaatatagacaaaagggtgtt 40302406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 6149095 - 6149145
Alignment:
Q  179 aatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtc 229  Q
    |||||||||| | || |||||||||||||||||||| ||||||| ||||||    
T  6149095 aatttacacccacttccatcatttcaaatattgttttcttaaaaatttgtc 6149145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 34347614 - 34347668
Alignment:
Q  304 gttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    ||||||||| |||| ||||| ||||| |||||||||||| |||||||| ||||||    
T  34347614 gttacaaaattgtcattctaattaaatttaattagaatagaaacaaaatggtgtt 34347668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 42443321 - 42443288
Alignment:
Q  319 ttctatttaaaattaattagaatataaacaaaag 352  Q
    |||||||| |||||||||||||||||||||||||    
T  42443321 ttctatttgaaattaattagaatataaacaaaag 42443288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 42907060 - 42907109
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||| ||||||| |||||||||||| |||||||| |||||| |||||||    
T  42907060 ccttcaatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 42907109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 30806038 - 30806082
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaa 222  Q
    ||||||||||  | |||||||||| ||||||||||||||||||||    
T  30806038 taatttacactcactttcatcattccaaatattgtttccttaaaa 30806082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 18053651 - 18053509
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||| |||| ||||||||||  | |||||||||| |||||||||||| ||||||||    
T  18053651 ttatttacactcatttttataaatattattaaggtgcaagttagcaaccttcactaatttacactcactttcatcattccaaatattgttttcttaaaag 18053552  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  18053551 tttgtctttattacatgttttgtaccttaagcatgtcattgtc 18053509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 13865857 - 13865945
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||  | ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13865857 taatttacactcactttcatcattctaaatattgtttcattaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 13865945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 6851868 - 6851974
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| ||| ||| | ||||||||||| | |||||||||| |||||||| |||| |||||||    
T  6851868 ttatttacacttatttttataagtataattaaggtgcaagttaacaatatttactaatttacacccactttcatcattccaaatattatttctttaaaag 6851967  T
Q  224 tttgtct 230  Q
    |||||||    
T  6851968 tttgtct 6851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 33483548 - 33483460
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||| | |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||  |||| | ||||||||||    
T  33483548 taatttacacccactttcatcattccaaatattgtttccttgaaagtttgtctctattacatgttttgtatattaagcctgtcattgtc 33483460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 18053473 - 18053408
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| | ||||| ||||||||    
T  18053473 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaatgagtgttttagtaaat 18053408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 20240129 - 20240079
Alignment:
Q  180 atttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||| |||||||    
T  20240129 atttacacccattttcatcatttcaaacattgcttctttaaaaatttgtct 20240079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 22134113 - 22134063
Alignment:
Q  180 atttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||| |||||||    
T  22134113 atttacacccattttcatcatttcaaacattgcttctttaaaaatttgtct 22134063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 22141466 - 22141416
Alignment:
Q  180 atttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||| |||||||    
T  22141466 atttacacccattttcatcatttcaaacattgcttctttaaaaatttgtct 22141416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 31730506 - 31730557
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||||| | ||||||||||| | ||||||||| |||||||||||||||    
T  31730506 taatttacacccactttcatcatttaacatattgttt-cttaaaagtttgtct 31730557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 34042055 - 34041913
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||||||||  ||||||||||||  ||||||||||||||||||||    
T  34042055 ttatttacactcatttttataagtattattaaggtgcaagttaacaaccttcactaatttacactcattttcatcattctaaatattgtttccttaaaag 34041956  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  34041955 tttgtctttattacatgtttcgtaccttaagcatgtcattgtc 34041913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 34293223 - 34293365
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||| |||| |||||| |||| | ||||||||||  ||||||||||| ||||||||    
T  34293223 ttatttacactcatttttataagtattattaaggtgcatgttagcaaccttcactaattttcacccactttcatcattcaaaatattgttttcttaaaag 34293322  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  34293323 tttgtctttattacatgttttgtaccttaagcatgtcattgtc 34293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 1688131 - 1688057
Alignment:
Q  192 tttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  1688131 tttcatcattccaaatattgtttctttaaaaatttgtctttattacatgttttgtacattaagcatgtcattgtc 1688057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 24831072 - 24830987
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcatt 263  Q
    ||||||||||  | ||||||| || |||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||    
T  24831072 taatttacacacactttcatcgttccaaatattgtttccttaaaagtttgtctctattacatgtcttgtatcttaagcatgtcatt 24830987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 7017084 - 7017178
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttcctta 219  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| |||| |||| | ||||||||| | |||||| ||| |||||||||||||||||    
T  7017084 ttatttacactcatttttataagtattattatggtgcaagttaacaaccttcact-atttacacccactttcatgattccaaatattgtttcctta 7017178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 7017248 - 7017309
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagt 363  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  7017248 tagttacaaaattgcccttctacttaaaattaattagaatataaacaaaagggtgttttagt 7017309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 34293398 - 34293463
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34293398 tagttacaaaattacccttctatttaaaattaattataatataaacaaaagggtgttttagtaaat 34293463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 15478186 - 15478120
Alignment:
Q  192 tttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgt 259  Q
    |||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||    
T  15478186 tttcatcatt-caaatattatttccttaaaagtttgtctctgttacatgttttgtaccttaagcatgt 15478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 1688022 - 1687966
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    ||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||    
T  1688022 tagttacaaaaatgtcattctatttaaatttaattagaatagaaacaaaagggtgtt 1687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 53732289 - 53732353
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||||| |||| |||||||    
T  53732289 tagttacaaaactacccttctatttaaatttaattagaatagaaacaaaaggatgttttagtaaa 53732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 23996317 - 23996268
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  23996317 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 23996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 34041878 - 34041829
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaa 351  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||||||    
T  34041878 tagttacaaaattgtcctttcatttaaaattgattagaatataaacaaaa 34041829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 46798844 - 46798908
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||| || | |||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  46798844 tagttacaaaagtgccattctatttaatattaattaaaatataatcaaaagagtgttttagtaaa 46798908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 8434556 - 8434488
Alignment:
Q  124 ttatttacactaatttttataagtattattaa----gatgcaagttagcaacattcagtaatttacacc 188  Q
    ||||||||||| ||||||||||||||||||||    | || ||||||||||| |||| |||||||||||    
T  8434556 ttatttacactcatttttataagtattattaaggtgggtgtaagttagcaaccttcactaatttacacc 8434488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 47786358 - 47786308
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgt 228  Q
    ||||||||| | || || |||||||||||||||||||| ||||||||||||    
T  47786358 taatttacatccatctttatcatttcaaatattgtttctttaaaagtttgt 47786308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 136 - 266
Target Start/End: Original strand, 37553176 - 37553306
Alignment:
Q  136 atttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttatt 235  Q
    |||||||||||||||| |||| |||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  37553176 atttttataagtattaataaggtgcaagttagtaacattcactaatttacacccattttcatcgtttcaaatattgtttctttaaaagtttgtctttatt 37553275  T
Q  236 acatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||| ||||||||||||    
T  37553276 acatgttttgtaccttaagcatgtcattgtc 37553306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 49901362 - 49901503
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| ||| ||||||||||||||||||||  |||||||    
T  49901362 ttatttacactcatttttataagtattattaaggtgcaagttagcaaccttcaataatttaccccacttt-catcatttcaaatattgtttttttaaaag 49901460  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  49901461 tttgtctttattacatattttgtaccttaaacatttcattgtc 49901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 13414092 - 13413950
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||| |  |||||||||||||||||||| || || |||||||  || | ||||||||||| | ||||||||||||||||||||||||||||||||    
T  13414092 ttatttacattcgtttttataagtattattaaggtgtaaattagcaaattttactaatttacacccactttcatcatttcaaatattgtttccttaaaag 13413993  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  13413992 tttgtctttattatatgttttgtactttaaacatgtcattgtc 13413950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 30694364 - 30694504
Alignment:
Q  126 atttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttcct-taaaagt 224  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| | ||||||||||  |||||||||||| | |||||||    
T  30694364 atttacactcatttttataagtattattaaggtgcaagttagcaacattcactaa-ttacacccactttcatcattctaaatattgtttcttgtaaaagt 30694462  T
Q  225 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  30694463 ttgtctttattacatgttttgtacgttaagcatgtcattgtc 30694504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 508722 - 508592
Alignment:
Q  128 ttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttg 227  Q
    ||||||| |||||||||||||||||||||       ||| |||| |||| ||||||||||  | ||| ||||||||||||||||||||||||||||||||    
T  508722 ttacactcatttttataagtattattaag-------ttaacaaccttcactaatttacactcacttttatcatttcaaatattgtttccttaaaagtttg 508630  T
Q  228 tctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  508629 tctttattacatattttgtaccttaagcatgtcattgt 508592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 36018038 - 36018131
Alignment:
Q  173 ttcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||| |||||| |||| | ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  36018038 ttcactaatttgcacccacttttatcatttcaaatattgtttccttaaaaatttgtctctattacatgttttgtaccttaaacatgtcattgtc 36018131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 13413918 - 13413849
Alignment:
Q  298 aagttagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  13413918 aagttagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaat 13413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 34503771 - 34503680
Alignment:
Q  137 tttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgt 228  Q
    |||||||||||||||||||| ||||| |||||||| |||| ||||||| | | |||||||||||| |||||||||| || ||||||||||||    
T  34503771 tttttataagtattattaaggtgcaatttagcaaccttcactaatttatatccattttcatcattccaaatattgtatcattaaaagtttgt 34503680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 508555 - 508490
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  508555 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaat 508490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 10920644 - 10920713
Alignment:
Q  192 tttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtca 261  Q
    ||||||||||| ||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||    
T  10920644 tttcatcattttaaatattgtttccttgaaagtttgtccctattacatgttttgtacattaaacatgtca 10920713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 29119261 - 29119200
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  29119261 aaatattgtttccttaaaagtttgtctctattacatgttttataccttaaacatgccattgt 29119200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 35760413 - 35760352
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  35760413 aaatattgtttccttaaaagtttgtctgtattacatgttttataccttaagcatgtcattgt 35760352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 46435375 - 46435314
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  46435375 aaatattgtttccttaaaagtttgtctctattacatgttttataccttagacatgtcattgt 46435314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 3979733 - 3979805
Alignment:
Q  181 tttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaa 253  Q
    |||||||| | |||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3979733 tttacacccactttcatcattccaactattgtttccttaaaagtttatctctattacatgttttgtaccttaa 3979805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 30694540 - 30694595
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgt 357  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  30694540 tagttacaaaactgtccttttatttaaaattaattataatataaacaaaagggtgt 30694595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 46835200 - 46835130
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtac 248  Q
    ||||||||||| | ||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||    
T  46835200 taatttacacccactttcatcatttcaaatattatttgtttaaaagtttgtctctattacatgttttgtac 46835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 27055811 - 27055872
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||    
T  27055811 aaatattgtttccttaaaagtttgtctctattacatattttataccttaagcatgtcattgt 27055872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 32708979 - 32708893
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||| | |||||| ||| |||||||| ||| ||||||||||||||  |||||||||||||||| |||||| |||||||||||    
T  32708979 taatttacacccactttcatgattccaaatattattttcttaaaagtttgtc--tattacatgttttgtatcttaaatatgtcattgtc 32708893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 37553342 - 37553407
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  37553342 tagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaat 37553407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 49901542 - 49901604
Alignment:
Q  305 ttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||| |||| |||||||||||||||||||||||||||| |||||||| || ||||||||    
T  49901542 ttacaaaattgtcattctatttaaaattaattagaatataaataaaagggtcttttagtaaat 49901604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 36018167 - 36018231
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||||| ||||||||||| ||||||| |||| ||| |||| |||||| |||||||    
T  36018167 tagttacaaaactgtcattctatttaaatttaattaaaatagaaataaaatggtgttttagtaaa 36018231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 24656510 - 24656589
Alignment:
Q  173 ttcagtaatttacaccaattttcatcatttcaaatattg---tttccttaaaagtttgtctttattacatgttttgtacc 249  Q
    |||| ||||||||||| ||||| |||||| |||||||||   |||||||||||||||||   ||||||||||||| ||||    
T  24656510 ttcactaatttacacccatttttatcattccaaatattgttttttccttaaaagtttgttcatattacatgttttctacc 24656589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 27055928 - 27055977
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  27055928 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 27055977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 29119149 - 29119100
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  29119149 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 29119100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 46435263 - 46435214
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  46435263 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 46435214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 52594924 - 52594868
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||| |||| ||||||    
T  52594924 tagttacaaaattgtccttctgtttaaatttaattagaataaaaataaaatggtgtt 52594868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 24656371 - 24656422
Alignment:
Q  193 ttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgtttt 244  Q
    |||||||||||||||||| || ||||||||||||||   |||||||||||||    
T  24656371 ttcatcatttcaaatattattaccttaaaagtttgttcatattacatgtttt 24656422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 26214010 - 26214060
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgt 228  Q
    ||||||||||| | ||||||||||| ||||||| ||| |||||||||||||    
T  26214010 taatttacacccactttcatcatttaaaatattattttcttaaaagtttgt 26214060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 35760301 - 35760252
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| || ||| |||||||    
T  35760301 ccttctatttaaatttaattagaatagaaacaaaaaggcgttttagtaaa 35760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 46832782 - 46832717
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaatt-aattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||||   |||||||| ||||| |||||||||| |||||||| |||||| |||||||    
T  46832782 tagttacaaaactgcatttctattttaaatttaattagaatagaaacaaaatggtgttttagtaaa 46832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 32708857 - 32708801
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    |||||||||||||||| || |||||||| ||||||| |||| ||| |||| ||||||    
T  32708857 tagttacaaaactgtcattttatttaaatttaattaaaatagaaataaaaaggtgtt 32708801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 9964093 - 9963952
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||||||| |||| ||||||||||| | |||||||||| |||||||||||| ||||||||    
T  9964093 ttatttacactcattttt-taaatattattaaggtgcaagttagcaaccttcactaatttacacccactttcatcattccaaatattgtttgcttaaaag 9963995  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  9963994 tttgtctttattacatgttttgtaccttaagcatgtcattgtc 9963952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 1507647 - 1507529
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgta 247  Q
    ||||||||| |||||||||||||| |||| ||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  1507647 attattaaggtgcaagttagcaaccttcactaatttacacccactttcatcattccaaatattgtttcgttaaaagtttgtctttattacatgttttgta 1507548  T
Q  248 ccttaaacatgtcattgtc 266  Q
    |||||||||||||||||||    
T  1507547 ccttaaacatgtcattgtc 1507529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 23102644 - 23102762
Alignment:
Q  148 attattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgta 247  Q
    ||||||||| |||||||||||||| |||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23102644 attattaaggtgcaagttagcaaccttcactaatttacacccactttcatcattccaaatattgtttccttaaaagtttgtctttattacatgttttgta 23102743  T
Q  248 ccttaaacatgtcattgtc 266  Q
     ||||| ||||| ||||||    
T  23102744 tcttaagcatgttattgtc 23102762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 9158789 - 9158701
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||| | ||||||||||  ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  9158789 taatttacacccactttcatcattctaaatattgtttccttaaaagtttgtctctattacatgatttgtaccttaagcatgtcattgtc 9158701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 24791103 - 24790966
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| ||||| ||||||||||||||| ||||| |||||||  |||| ||||| ||||  | ||||||||||||||||||||||| |||||||     
T  24791103 ttatttacactcatttt-ataagtattattaag-tgcaaattagcaattttcactaattgacactcactttcatcatttcaaatattgttttcttaaaaa 24791006  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcatt 263  Q
    |  |||||||||||||||||||||| ||||  ||||||||    
T  24791005 tcagtctttattacatgttttgtactttaaggatgtcatt 24790966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 2658550 - 2658463
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||||| ||| ||||||| ||||||||||||||||| || ||||||  ||||||||||||| |||||||||||||||||||||    
T  2658550 taatttacaccacttt-catcattccaaatattgtttccttacaaatttgtcactattacatgttttataccttaaacatgtcattgtc 2658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 1507493 - 1507428
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1507493 tagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaat 1507428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 24790931 - 24790862
Alignment:
Q  298 aagttagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  24790931 aagttagttacaaaattacccttctatttaaaattaattagaatataaacaaaaggatgttttagtaaat 24790862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 1398221 - 1398310
Alignment:
Q  178 taatttacac-caattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||||||| || ||||||  ||| |||||||||||||||||||||||||||| |||| |||||||||||| |||| ||| ||||||||    
T  1398221 taatttacactcacttttcacaattccaaatattgtttccttaaaagtttgtctctattgcatgttttgtactttaagcatatcattgtc 1398310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 2658426 - 2658362
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  2658426 tagttacaaaattgtccttctatttaaatttaattagaatagaaacaaaatggtgttttagtaaa 2658362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 33473614 - 33473702
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||| | |||||||||| ||||||||  || |||||||||  |||| | |||||||||||||||||||| ||||||||||||    
T  33473614 taatttacacccactttcatcattccaaatattactttcttaaaagtaagtctctcttacatgttttgtaccttaagcatgtcattgtc 33473702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 23102798 - 23102847
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaa 351  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  23102798 tagttacaaaattgcccttctatttaaaattaattagaatataaacaaaa 23102847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 9963900 - 9963856
Alignment:
Q  323 atttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  9963900 atttaaaattaattagaatataaacaaaagggtgttttagtaaat 9963856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 47413062 - 47412993
Alignment:
Q  298 aagttagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||||||||| ||  |||||| ||||||||||||| ||||||| ||||||||||||| | ||||||    
T  47413062 aagttagttacaaagctacccttctttttaaaattaatttgaatatagacaaaagggtgttttggtaaat 47412993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 10982443 - 10982395
Alignment:
Q  318 cttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||    
T  10982443 cttctatttaaaattaattagaatataatcaaaagggtattttagtaaa 10982395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 43439449 - 43439415
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaatt 336  Q
    |||||||||||||||||||||||||||||| ||||    
T  43439449 tagttacaaaactgtccttctatttaaaataaatt 43439415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 9158665 - 9158601
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||| |||| ||||||| ||| ||||| |||||| ||| |||| |||||| |||||||    
T  9158665 tagttacaaaattgtcattctattaaaatttaatcagaatagaaagaaaatggtgttttagtaaa 9158601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 33473738 - 33473802
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||| |||||||  |||||||||||| |||||||||||| |||  ||| |||||| |||||||    
T  33473738 tagttataaaactgctcttctatttaaatttaattagaatagaaatgaaaaggtgttttagtaaa 33473802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 280628 - 280486
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||| | ||||||||||||||||||||| || || |||||||  |||| ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  280628 ttatttacattcatttttataagtattattaaggtgtaaattagcaaatttcactaatttacacccactttcatcatttcaaatattatttccttaaaag 280529  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||| || |||||||||||||||||| |||||||||||||||||    
T  280528 tttttcgttattacatgttttgtactttaaacatgtcattgtc 280486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 280450 - 280385
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  280450 tagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaat 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 28867996 - 28867874
Alignment:
Q  142 ataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgt 241  Q
    ||||||||||||||| ||||||||||||||||||| ||||  ||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  28867996 ataagtattattaaggtgcaagttagcaacattcactaat--acaccaactttcatcattccaaataatgtttccttaaaaatttgtctttattacatgt 28867899  T
Q  242 tttgtaccttaaacatgtcattgtc 266  Q
     ||||||||||| ||||||||||||    
T  28867898 attgtaccttaagcatgtcattgtc 28867874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 15145505 - 15145402
Alignment:
Q  126 atttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaagtt 225  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||| |||| ||||||||||| | ||| |||||| |||||||| |||| |||||||||    
T  15145505 atttacactcatttttataagtattactaaggtgcaagttagcaaccttcactaatttacacccacttttatcattgcaaatattatttcattaaaagtt 15145406  T
Q  226 tgtc 229  Q
    ||||    
T  15145405 tgtc 15145402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 9514671 - 9514606
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9514671 tagttacaaaattgtccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaat 9514606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 9514780 - 9514707
Alignment:
Q  193 ttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  9514780 ttcatctttccaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaagcatggcattgtc 9514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 36896723 - 36896811
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||| | | ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  36896723 taatttacatccactttcatcattctaaatattgttttcttaaaagtttgtctttattacatgttttgtatcttaagcatgttattgtc 36896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 26637602 - 26637526
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaa 254  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||   |||||||||||||| |||||||||    
T  26637602 taatttacacccactttcatcatttcaaatattgtttacttaaaagtttgctattattacatgttttttaccttaaa 26637526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 18933522 - 18933447
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaa 253  Q
    ||||||||||  | ||||||||||| |||||||||||| |||||||||||||  |||||||||||||||| |||||    
T  18933522 taatttacactcactttcatcattttaaatattgtttctttaaaagtttgtccatattacatgttttgtatcttaa 18933447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 36896849 - 36896912
Alignment:
Q  304 gttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  36896849 gttacaaaattgcacttctattttaaattaattagaatataaacaaaagggtgttttagtaaat 36896912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 39058046 - 39057973
Alignment:
Q  192 tttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||||||  ||||||||||||||||||||||| ||| | ||||||||||| |||||||| |||||| ||||    
T  39058046 tttcatcattctaaatattgtttccttaaaagtttttctctgttacatgttttataccttaagcatgtctttgt 39057973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 28867836 - 28867773
Alignment:
Q  304 gttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||| ||| || |||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  28867836 gttacgaaattgcccttctatttaaaattaattagaatataaacaaaaatgtgttttagtaaat 28867773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 18014393 - 18014332
Alignment:
Q  204 aaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| || ||||| |||||||||||    
T  18014393 aaatattatttccttaaaagtttatctctattacatgttttatatcttaagcatgtcattgt 18014332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 39057930 - 39057866
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||| |||||| ||||||||||||| ||||||| |||  ||||||||||||||| |||||||    
T  39057930 tagttacgaaactgcccttctatttaaatttaattaaaattgaaacaaaagggtgttttagtaaa 39057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 14149038 - 14149094
Alignment:
Q  205 aatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcat 262  Q
    |||||||||||||||||||||||||| ||| ||||||||| || ||||| ||||||||    
T  14149038 aatattgtttccttaaaagtttgtctctatcacatgttttata-cttaagcatgtcat 14149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 14149147 - 14149196
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  14149147 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 14149196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 18014281 - 18014232
Alignment:
Q  317 ccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  18014281 ccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 18014232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 26637494 - 26637442
Alignment:
Q  306 tacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgtt 358  Q
    |||||||||| ||| ||||| |||||||||||| ||| ||||||||| |||||    
T  26637494 tacaaaactgccctactattaaaaattaattagtatagaaacaaaagagtgtt 26637442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 1603 - 1461
Alignment:
Q  124 ttatttacactaatttttataagtattattaagatgcaagttagcaacattcagtaatttacaccaattttcatcatttcaaatattgtttccttaaaag 223  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||   |||| ||||||| ||  | |||||||||| |||||||||||||||||| ||    
T  1603 ttatttacactcatttttataactattattaaggtgcaagttagcagttttcactaatttatactcactttcatcattccaaatattgtttccttaagag 1504  T
Q  224 tttgtctttattacatgttttgtaccttaaacatgtcattgtc 266  Q
    ||||||||||||| ||||||||||||||||  |||||||||||    
T  1503 tttgtctttattatatgttttgtaccttaagaatgtcattgtc 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 1426 - 1360
Alignment:
Q  301 ttagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaat 367  Q
    ||||||| |||| || |||| ||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  1426 ttagttataaaattgcccttttatttaaaattaattagaatataaataaaagagtgttttagtaaat 1360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 452901 - 452814
Alignment:
Q  178 taatttacaccaattttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgt 265  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  452901 taatttaaacccattttcatcattccaaatattgtttccttaaaagtttgtctctattacatgttttgtaccttaaacatgtcattgt 452814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 452777 - 452713
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 366  Q
    |||||||||||||| ||||||||||||| ||||||| |||| |||||||| |||||| |||||||    
T  452777 tagttacaaaactgcccttctatttaaatttaattaaaatagaaacaaaaaggtgttttagtaaa 452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 3542 - 3603
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaagggtgttgtagt 363  Q
    |||| |||||| |||| || ||||||||||||||||||||||||||||||||| ||| ||||    
T  3542 tagtaacaaaagtgtcattttatttaaaattaattagaatataaacaaaagggagttttagt 3603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 4015 - 3981
Alignment:
Q  196 atcatttcaaatattgtttccttaaaagtttgtct 230  Q
    ||||||||||||||||||||||||||||| |||||    
T  4015 atcatttcaaatattgtttccttaaaagtgtgtct 3981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 23071 - 23121
Alignment:
Q  302 tagttacaaaactgtccttctatttaaaattaattagaatataaacaaaag 352  Q
    |||||| ||||||||| | ||||||||| |||||||||||| |||||||||    
T  23071 tagttataaaactgtcatcctatttaaatttaattagaatagaaacaaaag 23121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University