View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_7 (Length: 376)
Name: NF8106_low_7
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 32197359 - 32197011
Alignment:
| Q |
14 |
ggacatcagagtcaccgctacaagcacggccacagacagaaacaccgtggtaccccacaagaagataattg---ccgctcgttgggctagaaaaaaggac |
110 |
Q |
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| T |
32197359 |
ggacaccagagtcgccactacaagcacggccacagacacaaacatcgtggtaccccacaagaagataactgttcccgctcattgggctagaaaaaaggac |
32197260 |
T |
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| Q |
111 |
agtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacggtcac |
210 |
Q |
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| T |
32197259 |
agtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagaactttgcatcagtactcagtcgtcattggagaatcttgtacggtcac |
32197160 |
T |
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| Q |
211 |
ctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgccactaaacaagtgtagtagtagtggaaaagaatctgatgttgtgtttat |
310 |
Q |
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| T |
32197159 |
ctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgccactaaacaagtgtagcagtagtggaaaagaatctgatgttgtgtttat |
32197060 |
T |
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| Q |
311 |
cttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
359 |
Q |
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| T |
32197059 |
cttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
32197011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 11341077 - 11341229
Alignment:
| Q |
107 |
ggacagtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacgg |
206 |
Q |
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| T |
11341077 |
ggacagccgatgtgtgtgtgagatttt--agtcaggttgcctccttttctcataagacctctgcatacttactcagtcgtctttggagaatcttgtacgg |
11341174 |
T |
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| Q |
207 |
tcacctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgcc |
262 |
Q |
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| T |
11341175 |
tcacttactcatgtggtggaccaatatgatggacaa-aattacgaatggtgatgcc |
11341229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 11499096 - 11499248
Alignment:
| Q |
107 |
ggacagtcgatgcgtgtgtgagattttttagttaggttgcctcctttccacacaagacctttgcatcagtactcagtcgtcattggagaatcttgtacgg |
206 |
Q |
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| T |
11499096 |
ggacagccgatgtgtgtgtgagatttt--agtcaggttgcctccttttctcataagacctctgcatacttactcagtcgtctttggagaatcttgtacgg |
11499193 |
T |
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| Q |
207 |
tcacctactcatgtggtggaccgatatgatgggcaacaattacaaatggtgatgcc |
262 |
Q |
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| T |
11499194 |
tcacttactcatgtggtggaccaatatgatggacaa-aattacgaatggtgatgcc |
11499248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 11341286 - 11341345
Alignment:
| Q |
300 |
gttgtgtttatcttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
359 |
Q |
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| T |
11341286 |
gttgtggttatcttttctgattcatagccttgttatttagctagctgttgttgattgttt |
11341345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 11499305 - 11499364
Alignment:
| Q |
300 |
gttgtgtttatcttttctgattcctagcctttttatttagcaagctcttgttgattgttt |
359 |
Q |
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| T |
11499305 |
gttgtggttatcttttctgattcatagccttgttatttagctagctgttgttgattgttt |
11499364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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