View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_low_8 (Length: 372)

Name: NF8106_low_8
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_low_8
NF8106_low_8
[»] chr1 (13 HSPs)
chr1 (115-370)||(2136648-2136902)
chr1 (290-370)||(4073559-4073639)
chr1 (290-370)||(31183482-31183562)
chr1 (287-370)||(50709560-50709642)
chr1 (288-370)||(46594235-46594316)
chr1 (292-370)||(50461215-50461293)
chr1 (273-370)||(22791099-22791194)
chr1 (201-278)||(50709456-50709533)
chr1 (201-253)||(31183347-31183399)
chr1 (195-246)||(50727143-50727194)
chr1 (195-253)||(50461383-50461441)
chr1 (201-253)||(4073720-4073772)
chr1 (201-253)||(22791262-22791314)
[»] chr8 (7 HSPs)
chr8 (273-372)||(9136734-9136833)
chr8 (273-370)||(14180065-14180161)
chr8 (273-370)||(37231793-37231890)
chr8 (322-369)||(2813782-2813829)
chr8 (236-278)||(9136842-9136884)
chr8 (201-253)||(2813911-2813963)
chr8 (288-352)||(12006746-12006810)
[»] chr6 (4 HSPs)
chr6 (273-370)||(6724483-6724581)
chr6 (201-370)||(17533431-17533614)
chr6 (286-352)||(7495029-7495095)
chr6 (322-370)||(212120-212168)
[»] chr4 (9 HSPs)
chr4 (273-370)||(22198880-22198977)
chr4 (273-370)||(43770573-43770670)
chr4 (288-367)||(44746443-44746522)
chr4 (290-370)||(21619592-21619673)
chr4 (201-262)||(43770799-43770860)
chr4 (195-247)||(47724769-47724821)
chr4 (195-253)||(44746300-44746356)
chr4 (273-370)||(34075163-34075259)
chr4 (201-245)||(34075338-34075382)
[»] chr3 (21 HSPs)
chr3 (273-370)||(24611468-24611565)
chr3 (273-370)||(47014280-47014376)
chr3 (273-370)||(24121081-24121179)
chr3 (287-370)||(43471806-43471888)
chr3 (286-370)||(1341681-1341765)
chr3 (290-372)||(31489532-31489613)
chr3 (273-370)||(50387206-50387297)
chr3 (195-247)||(16343060-16343112)
chr3 (322-370)||(21842601-21842649)
chr3 (322-370)||(21858244-21858292)
chr3 (195-247)||(36172115-36172167)
chr3 (312-372)||(36504877-36504937)
chr3 (201-247)||(12176663-12176709)
chr3 (195-253)||(24611633-24611691)
chr3 (201-247)||(31489703-31489749)
chr3 (201-247)||(35433403-35433449)
chr3 (195-253)||(43471670-43471728)
chr3 (194-247)||(50387083-50387136)
chr3 (201-253)||(2111324-2111375)
chr3 (201-253)||(24120962-24121014)
chr3 (288-372)||(29324114-29324198)
[»] chr2 (12 HSPs)
chr2 (273-370)||(26352608-26352705)
chr2 (273-368)||(18858485-18858580)
chr2 (274-370)||(3353132-3353228)
chr2 (273-352)||(43355764-43355843)
chr2 (320-370)||(36925598-36925648)
chr2 (273-370)||(45388763-45388860)
chr2 (195-273)||(36925460-36925538)
chr2 (288-370)||(16496802-16496884)
chr2 (195-260)||(43355907-43355972)
chr2 (195-247)||(14749462-14749514)
chr2 (203-249)||(3353007-3353053)
chr2 (201-253)||(26352492-26352544)
[»] chr7 (12 HSPs)
chr7 (121-352)||(46192303-46192554)
chr7 (273-366)||(31397202-31397295)
chr7 (286-372)||(44798201-44798287)
chr7 (286-370)||(48138530-48138613)
chr7 (179-253)||(48138376-48138450)
chr7 (319-370)||(24699812-24699862)
chr7 (179-247)||(6562424-6562492)
chr7 (201-253)||(24699742-24699794)
chr7 (273-335)||(2483785-2483847)
chr7 (201-247)||(31397368-31397414)
chr7 (179-220)||(44798404-44798445)
chr7 (195-247)||(9229522-9229574)
[»] chr5 (8 HSPs)
chr5 (276-370)||(7732241-7732335)
chr5 (273-370)||(12118331-12118426)
chr5 (273-350)||(42990701-42990778)
chr5 (195-256)||(16756244-16756305)
chr5 (273-334)||(41634409-41634470)
chr5 (196-253)||(42990576-42990633)
chr5 (288-372)||(5836542-5836626)
chr5 (274-338)||(27972008-27972072)
[»] scaffold0001 (1 HSPs)
scaffold0001 (323-370)||(394230-394277)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 115 - 370
Target Start/End: Original strand, 2136648 - 2136902
Alignment:
Q  115 agccccaataatttaaaacggagatgtacccgtatcggatgttgacattctgcagatacttcaaatacgtacctatgatatatcataattaattatttta 214  Q
    |||||||||||| ||||| | |||||||||||||||||||||||| ||| | || ||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  2136648 agccccaataatctaaaatg-agatgtacccgtatcggatgttgatattatacatatacttcgaatacgtacctacgatctatcagaattaattatttta 2136746  T
Q  215 atttaaccgatatattttatcagatacttataaaatacttcagagagatgtatcctggaaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatat 314  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  2136747 atttaaccgatatattttatcagatacttataaaatacttcggagagacatatcctgaaaaaaagtgagtatgtgttgtgaaaattcaatggaagtatat 2136846  T
Q  315 atagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  2136847 ataattcaatttaatatatgaatcaccacaattgttttacgattaaccaattaaaa 2136902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 4073639 - 4073559
Alignment:
Q  290 ttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||  | | | |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4073639 ttgtgaaaattcaatggcgatgtgtatgattcaatttaagatatgaatcactataattgtttttcgattaaccaattaaaa 4073559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 31183482 - 31183562
Alignment:
Q  290 ttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||||| |  | |||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  31183482 ttgtgaaaattcaatggatatgtatataattcaatttgagatatgaatcactataattgcttttcgattaaccaattaaaa 31183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 50709560 - 50709642
Alignment:
Q  287 gtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||| || | |||||  ||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  50709560 gtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcattataattgtttttcga-taaccaattaaaa 50709642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 46594316 - 46594235
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||||||| || | |||||  |||||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  46594316 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcactataattgtttttcga-tgaccaattaaaa 46594235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 50461293 - 50461215
Alignment:
Q  292 gtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||  || | ||||| |||||||||||||||||||||  |||||||||||| ||||||||||| |||||    
T  50461293 gtgaaaattcaatagagatgtatatggttcaatttaagatatgaatcgatataattgtttttcgattaaccaaataaaa 50461215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 22791194 - 22791099
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||| ||||  |||||||||||||||||||| |  | |||||  |||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  22791194 aaaaaaatgagactgtgttgtgaaaattcaatggatatgtatatgattcaatttaagatatgaatcactacaattgtttt-cga-taaccaattaaaa 22791099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 50709456 - 50709533
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatacttcagagagatgtatcctggaaaaaa 278  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| ||| || | ||||| |||||||| ||||||    
T  50709456 aattaattattttaatttaaaatatatattttatcagatacttataagatattttacagagacgtatcctgaaaaaaa 50709533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 31183347 - 31183399
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||| ||||||||||||||   |||||||||||||||||||||||| |||||    
T  31183347 aattatttattttaatttaaaatatatattttatcagatacttataagatact 31183399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 50727143 - 50727194
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttata 246  Q
    ||||||||||||||||||||||||||   ||| ||||||||| |||||||||    
T  50727143 tatcataattaattattttaatttaaaatatacattttatcatatacttata 50727194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 50461441 - 50461383
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||| |||||||||||||||||| |   ||||||||||||  ||||||||||||||||    
T  50461441 tatcaaaattaattattttaattttaaaaatatattttatcgaatacttataaaatact 50461383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 4073772 - 4073720
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   ||||||||||||  |||||||||| |||||    
T  4073772 aattaattattttaatttaaaatatatattttatcgaatacttataagatact 4073720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 22791314 - 22791262
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||    ||||||||||| ||||||||||| |||||    
T  22791314 aattaattattttaatttaaaatgtatattttatcggatacttataagatact 22791262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 9136833 - 9136734
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    |||||||||||  |||||||||||||||||||| ||  ||||||  |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  9136833 aaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaatttaaaataagaatcactataattgtttttcgattaaccaattaaaatt 9136734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 14180065 - 14180161
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||| ||||||| ||||||||||||| || | |||||  |||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  14180065 aaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaatttaagatatgtatcactataatt-tttttcgattaaccaattaaaa 14180161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 37231793 - 37231890
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||  |||||||||||||||||||| || | ||||   ||||||||||||||||||||||  ||| | |||| |||||||||||||||||    
T  37231793 aaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaatttaagatatgaatcacagtaaatatttttcgattaaccaattaaaa 37231890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 2813829 - 2813782
Alignment:
Q  322 aatttaagatatgaatcactataattgttttacgattaaccaattaaa 369  Q
    ||||||||||| |||||||||||||| |||| |||||||| |||||||    
T  2813829 aatttaagatacgaatcactataattatttttcgattaacaaattaaa 2813782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 9136884 - 9136842
Alignment:
Q  236 agatacttataaaatacttcagagagatgtatcctggaaaaaa 278  Q
    |||||||||||| |||||||| ||||| |||||||||||||||    
T  9136884 agatacttataacatacttcacagagacgtatcctggaaaaaa 9136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 2813963 - 2813911
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   |||||||||||  ||||||||||| |||||    
T  2813963 aattaattattttaatttaaaatatatattttataggatacttataagatact 2813911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 12006746 - 12006810
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgtttt 352  Q
    ||||||||||||||| || || | |||||  |||||||| ||||||| ||||||| |||||||||    
T  12006746 tgttgtgaaaattcagtggagatgtatatgattcaattttagatatgcatcactagaattgtttt 12006810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 6724581 - 6724483
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaatt-caatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||  ||||||||||||||| ||||| || | |||||  ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6724581 aaaaaagtgaggctgtgttgtgaaaatttcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 6724483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 370
Target Start/End: Complemental strand, 17533614 - 17533431
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatacttcagagagatgtatcctggaaaaaagtga---gta------------ 285  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| |||||||| ||||| ||||| | ||||||| |||   |||                
T  17533614 aattaattattttaatttaaaatatatattttatcggatacttataagatacttcacagagacgtatcttagaaaaaaatgaaatgtaaaaaaaaaaaga 17533515  T
Q  286 -tgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
     |||||||||||||||||||| || | ||||| | | |||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  17533514 ttgtgttgtgaaaattcaatggagatgtatat-gattaatttaagatatgaatcactgtaattgtttttcga-taaccaattaaaa 17533431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 7495095 - 7495029
Alignment:
Q  286 tgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgtttt 352  Q
    |||||||||||||||||||| || | || ||  ||||||||||||||||||||||||||||||||||    
T  7495095 tgtgttgtgaaaattcaatggagatgtacatgattcaatttaagatatgaatcactataattgtttt 7495029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 212168 - 212120
Alignment:
Q  322 aatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||||| | ||||||||||||  ||||||| ||||||||    
T  212168 aatttaagatatgaattaatataattgtttttagattaactaattaaaa 212120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 22198977 - 22198880
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||  |||||||| |||||| ||||||| | |||||  |||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  22198977 aaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaatttaagacacgaatcactataattgtttttcgattaaccaattaaaa 22198880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 43770670 - 43770573
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||| |||||  ||||||||||||||||||||||| | |||||  |||||||||||||||||||||||| |||||| || |||||||||| ||||||    
T  43770670 aaaaatgtgagactgtgttgtgaaaattcaatgaagatgtatatgattcaatttaagatatgaatcactacaattgtctttcgattaaccagttaaaa 43770573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 44746443 - 44746522
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaatta 367  Q
    |||||||||||||||||  || | |||||  ||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  44746443 tgttgtgaaaattcaattgagatgtatatgattcaatttaagatataaattactataattgtttttcgattaaccaatta 44746522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 21619592 - 21619673
Alignment:
Q  290 ttgtgaaaattcaatgaaggtatatatagttcaattt-aagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||| | |||||  |||||||| ||||||||||| | |||||||||||| ||||||| |||| ||||    
T  21619592 ttgtgaaaattcaatgaagatgtatatgattcaattttaagatatgaatgagtataattgtttttcgattaatcaatgaaaa 21619673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 43770860 - 43770799
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatacttcagagaga 262  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| ||| |||| |||||    
T  43770860 aattaattattttaatttaaaatatatattttatcggatacttataagatatttcacagaga 43770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 47724821 - 47724769
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||||||||||    
T  47724821 tatcagaattaattattttaatttaaaatatatattttatcggatacttataa 47724769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 44746300 - 44746356
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||| ||||||||||||||||||||   ||||||||||||  ||||||||||||||||    
T  44746300 tatcagaattaattattttaatttaa--aatatattttatcgaatacttataaaatact 44746356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 34075259 - 34075163
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||| ||||  |||||| ||||||||||||  || | ||||   ||||||||||||||||||||||||||| || ||| ||| |||| ||||||||    
T  34075259 aaaaaaatgagattgtgttatgaaaattcaattgagatgtatacgattcaatttaagatatgaatcactataactgcttttcga-taacaaattaaaa 34075163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 34075382 - 34075338
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttat 245  Q
    ||||||||||||||||||||   |||||||||||| |||||||||    
T  34075382 aattaattattttaatttaaaatatatattttatcggatacttat 34075338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 24611565 - 24611468
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||  ||||||||||||| |||||| || | |||||  |||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  24611565 aaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaatttaatatatgaatcactataattgtttttcaattaaccaattaaaa 24611468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 47014280 - 47014376
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||| || ||||||||||||||||||||| | |||||  |||||||| |||||| ||||| |||||||||||| |||||||||||||||||    
T  47014280 aaaaaagtgagaatatgttgtgaaaattcaatgaagatgtatatgattcaattt-agatataaatcattataattgtttttcgattaaccaattaaaa 47014376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 24121081 - 24121179
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacg-attaaccaattaaaa 370  Q
    ||||||||||| |||||||||||||| |||||| |||| ||| |  ||||||||||||||||||||||| |||||||||| ||  ||||||||||||||    
T  24121081 aaaaaagtgagaatgtgttgtgaaaaatcaatggaggtgtatttgattcaatttaagatatgaatcactgtaattgtttttcgctttaaccaattaaaa 24121179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 43471806 - 43471888
Alignment:
Q  287 gtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||  || | |||||  ||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  43471806 gtgttgtgaaaattcaattgagatgtatatgattcaatttaagatatgaatcactataactgtttttcga-taaccaattaaaa 43471888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 1341765 - 1341681
Alignment:
Q  286 tgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||||||||  || |  ||||  |||| |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  1341765 tgtgttgtgaaaattcaatagagatgcatatgattcattttaagatatgaatcattataattgtttttcgattaactaattaaaa 1341681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 31489613 - 31489532
Alignment:
Q  290 ttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    ||||||||||||||||||  | |||||  |||||||||||| | |||||| ||| |||||||| |||||||||||||||||||    
T  31489613 ttgtgaaaattcaatgaaa-tgtatatgattcaatttaagacacgaatcagtatgattgtttttcgattaaccaattaaaatt 31489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 50387206 - 50387297
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||| ||||| |||||||| ||||||||||    ||||||||  |||||||||| ||||||| |||||||||| ||||   |||||||||||||||    
T  50387206 aaaaaaatgagtttgtgttgttaaaattcaat----gtatatatgattcaatttaaaatatgaaccactataattatttt--tattaaccaattaaaa 50387297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 16343060 - 16343112
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    |||||||||||||| |||||||||||   |||||||||||| |||||||||||    
T  16343060 tatcataattaattcttttaatttaaaatatatattttatcggatacttataa 16343112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 21842601 - 21842649
Alignment:
Q  322 aatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||| |||||||||| || ||||||||||| |||||    
T  21842601 aatttaagatatgaatcgctataattgtatttcgattaaccaaataaaa 21842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 21858244 - 21858292
Alignment:
Q  322 aatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||| |||||||||| || ||||||||||| |||||    
T  21858244 aatttaagatatgaatcgctataattgtatttcgattaaccaaataaaa 21858292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 36172167 - 36172115
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||||||||||    
T  36172167 tatcagaattaattattttaatttaaaatatatattttatcggatacttataa 36172115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 36504877 - 36504937
Alignment:
Q  312 tatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    ||||| ||||||||| ||||||| ||||||| ||||||||  |||| ||||||||||||||    
T  36504877 tatatggttcaattttagatatgcatcactagaattgtttctcgatgaaccaattaaaatt 36504937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 12176709 - 12176663
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||    
T  12176709 aattaattattttaatttaaaatatatattttatcggatacttataa 12176663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 24611691 - 24611633
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||| ||||||||||||||||||||   | |||||||||| ||||||||||| |||||    
T  24611691 tatcagaattaattattttaatttaaaatacatattttatcggatacttataagatact 24611633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 31489749 - 31489703
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||    
T  31489749 aattaattattttaatttaaaatatatattttatcatatacttataa 31489703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 35433403 - 35433449
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||    
T  35433403 aattaattattttaatttaaaatatatattttatcggatacttataa 35433449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 43471670 - 43471728
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||| |||||||||||||||||| |   |||||||||||| ||||||||||| |||||    
T  43471670 tatcagaattaattattttaattttaaatatatattttatcggatacttataagatact 43471728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 50387083 - 50387136
Alignment:
Q  194 atatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||||||||||||||||| |||||   ||||||||||||  ||||||||||    
T  50387083 atatcataattaattattttagtttaaaatatatattttatcgaatacttataa 50387136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 2111324 - 2111375
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| |||||    
T  2111324 aattaattattttaatttaaat-atatattttatcggatacttataagatact 2111375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 24120962 - 24121014
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   |||||||||||| ||| ||||||| |||||    
T  24120962 aattaattattttaatttaaaatatatattttatcggatgcttataagatact 24121014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 29324114 - 29324198
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    |||||| ||| |||||| ||| | |||||  |||||||| ||||||| |||| |||||||||||  |||| ||||| ||||||||    
T  29324114 tgttgtaaaacttcaataaagatgtatatcattcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaatt 29324198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 26352608 - 26352705
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||| ||| |||||||||||||||| || | | |||  ||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  26352608 aaaaaagtgagtctgttttgtgaaaattcaatggagatgtgtatgattcaatttaagatatgagtcactataattgtttctcgattaaccaattaaaa 26352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 18858485 - 18858580
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaa 368  Q
    |||||||||| |||||| |||| ||||||||||||| | |||||  ||||||||| ||||||||| | |||||||||||| |||||||||||||||    
T  18858485 aaaaaagtgaatatgtgatgtgtaaattcaatgaagatgtatatgattcaatttatgatatgaatgaatataattgtttttcgattaaccaattaa 18858580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 3353132 - 3353228
Alignment:
Q  274 aaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||  | ||||||||||||| |||| |  | |||||  ||||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  3353132 aaaaagtgagactatgttgtgaaaatttaatggaaatgtatatgattcaatttaagatatgaatcattataattgtttttcgattaaccagttaaaa 3353228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 43355843 - 43355764
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgtttt 352  Q
    |||||| ||||  |||||||||||||||||||| || | |||||  ||||| ||||||||||||||||||||||||||||    
T  43355843 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaagttaagatatgaatcactataattgtttt 43355764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 36925598 - 36925648
Alignment:
Q  320 tcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  36925598 tcaatttaagatatgaatgactataattgtttttcgattaaccaattaaaa 36925648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 45388763 - 45388860
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||| ||||  |||||||||||||||||||| || |  || |  ||||||||||||||| ||||||||||||| |||| |||||||| ||||||||    
T  45388763 aaaaaaatgagactgtgttgtgaaaattcaatggagattaatttgattcaatttaagatataaatcactataattatttttcgattaactaattaaaa 45388860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 36925460 - 36925538
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatacttcagagagatgtatcctgga 273  Q
    ||||| |||||| |||||||||||||   |||||||||||| ||||||||||| ||||||||  |||| ||||||||||    
T  36925460 tatcagaattaactattttaatttaaaatatatattttatcggatacttataagatacttcattgagacgtatcctgga 36925538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 16496884 - 16496802
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||||| | |||||  |||||||| |||| ||||||| || ||||||||  |||| ||||| ||||||    
T  16496884 tgttgtgaaaattcaatgaagatgtatatgattcaattttagatgtgaatcagtaaaattgtttctcgatgaaccacttaaaa 16496802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 43355972 - 43355907
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatacttcagaga 260  Q
    ||||| ||||||||||||||||||||   |||||||||||  ||||||||||| |||||| |||||    
T  43355972 tatcagaattaattattttaatttaaaatatatattttattggatacttataagatacttgagaga 43355907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 14749462 - 14749514
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||||||||||    
T  14749462 tatcagaattaattattttaatttaaaatatatattttatcggatacttataa 14749514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 3353007 - 3353053
Alignment:
Q  203 ttaattattttaatttaaccgatatattttatcagatacttataaaa 249  Q
    |||||||||||||||||| | |||||||||||| |||| ||||||||    
T  3353007 ttaattattttaatttaaactatatattttatcggatatttataaaa 3353053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 26352492 - 26352544
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   |||||||||||  ||||||||||| |||||    
T  26352492 aattaattattttaatttaaaatatatattttattggatacttataagatact 26352544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 352
Target Start/End: Complemental strand, 46192554 - 46192303
Alignment:
Q  121 aataatttaaaacggagatgtacccgtatcggatgttgacattctgcagatact-tcaaatacgtacc-tatgatatatcataattaattattttaattt 218  Q
    |||| ||||||| ||||| ||||||||||| |||  ||| |||| ||||||| | ||  |||||| || || || |||||||||||||||||||||||||    
T  46192554 aatactttaaaatggagacgtacccgtatcagatactgatattccgcagatattctcggatacgtgccctacgaaatatcataattaattattttaattt 46192455  T
Q  219 aaccgatatattttatcagatacttataaaatacttcagagagatgtatcctgga------------------aaaaagtgagtatgtgttgtgaaaatt 300  Q
    ||   |||||||||||||||||||||||| |||||||| ||||| || |||   |                  |||||||||| ||||||||||||||||    
T  46192454 aaaatatatattttatcagatacttataagatacttcacagagacgtgtcccaaaaagaaagaaaaaaagataaaaaagtgagaatgtgttgtgaaaatt 46192355  T
Q  301 caatgaaggtatatatagttcaatttaagatatgaatcactataattgtttt 352  Q
    |||||||| | |||||  || ||||||||||||||||||| |||||||||||    
T  46192354 caatgaagatgtatatgatttaatttaagatatgaatcacaataattgtttt 46192303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 31397295 - 31397202
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaatt 366  Q
    |||||||||||  ||||||||||||||| |||| |  |||||||   |||||||||||||| |||||||||||||||||| | |||||||||||    
T  31397295 aaaaaagtgagactgtgttgtgaaaattgaatggaaatatatatgactcaatttaagatataaatcactataattgtttttcaattaaccaatt 31397202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 44798287 - 44798201
Alignment:
Q  286 tgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    ||||||||||||||||| || || | ||| |  ||||||||||||||||||||||||||||| |||  | |||||||||||||||||    
T  44798287 tgtgttgtgaaaattcagtggagatgtatgtgtttcaatttaagatatgaatcactataattatttctcaattaaccaattaaaatt 44798201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 48138530 - 48138613
Alignment:
Q  286 tgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||| |||||||| |||| || | |||||  ||||||||||||||||||||||||||||| |||| ||| |||||||||||||    
T  48138530 tgtgttctgaaaatttaatggagatgtatatgattcaatttaagatatgaatcactataattatttttcga-taaccaattaaaa 48138613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 48138376 - 48138450
Alignment:
Q  179 atacgtacctatgatatatcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||| || |||||  ||||||||||||||||||||   |||||||||||| ||||||||||| |||||    
T  48138376 atacgtacctacgaaatatcggaattaattattttaatttaaaatatatattttatcggatacttataagatact 48138450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 24699812 - 24699862
Alignment:
Q  319 ttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  24699812 ttcaatttaagatatgaattactataattgtttttcga-taaccaattaaaa 24699862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 6562492 - 6562424
Alignment:
Q  179 atacgtacctatgatatatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||| ||||||  ||||| ||||||||||||||||||||   |||||||||||| ||| |||||||    
T  6562492 atacgtatctatgaagtatcaaaattaattattttaatttaaaatatatattttatcggatgcttataa 6562424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 24699742 - 24699794
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| |||||    
T  24699742 aattaattattttaatttaaaatatatattttatcggatacttataagatact 24699794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 2483785 - 2483847
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatga 335  Q
    |||||||||||  | |||||||||||| |||||||| | |||||  |||||||||||||||||    
T  2483785 aaaaaagtgagactatgttgtgaaaatgcaatgaagatgtatatgattcaatttaagatatga 2483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 31397414 - 31397368
Alignment:
Q  201 aattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||    
T  31397414 aattaattattttaatttaaaatatatattttatcggatacttataa 31397368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 44798445 - 44798404
Alignment:
Q  179 atacgtacctatgatatatcataattaattattttaatttaa 220  Q
    ||||||||| ||||  ||||||||||||||||||||||||||    
T  44798445 atacgtacccatgaagtatcataattaattattttaatttaa 44798404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 9229574 - 9229522
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataa 247  Q
    ||||| ||||||||||||||||||||   |||||||||||  |||||||||||    
T  9229574 tatcagaattaattattttaatttaaaatatatattttattggatacttataa 9229522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 7732241 - 7732335
Alignment:
Q  276 aaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    |||||||| ||||||||||||||||||| | |  | |||||  ||||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  7732241 aaagtgaggatgtgttgtgaaaattcaacggatatgtatatgattcaatttaagatatgaatcactataactgtttttcgattagccaattaaaa 7732335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 12118331 - 12118426
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||  |||||||||||||||||||||||  | |||||  ||||||||||||||||||||| ||||| |||||| |||||||| ||||||||    
T  12118331 aaaaaagtga--atgtgttgtgaaaattcaatgaaaatgtatatgattcaatttaagatatgaatcagtataactgtttttcgattaactaattaaaa 12118426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 42990701 - 42990778
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgtt 350  Q
    |||||| ||||  |||||||||||||||||||| || | |||||  ||||||||||||||||||||||||||||||||    
T  42990701 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcactataattgtt 42990778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 16756305 - 16756244
Alignment:
Q  195 tatcataattaattattttaatttaaccgatatattttatcagatacttataaaatacttca 256  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||| || ||| ||||||||    
T  16756305 tatcagaattaattattttaatttaaaatatatattttatcagatatttgtaacatacttca 16756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 41634409 - 41634470
Alignment:
Q  273 aaaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatg 334  Q
    ||||| |||||  |||||||||||||||||||| || | |||||  ||||||||||||||||    
T  41634409 aaaaaggtgagattgtgttgtgaaaattcaatggagatgtatatcattcaatttaagatatg 41634470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 42990576 - 42990633
Alignment:
Q  196 atcataattaattattttaatttaaccgatatattttatcagatacttataaaatact 253  Q
    |||| ||||||||||||||||||||   |||||||||||  ||||||||||| |||||    
T  42990576 atcagaattaattattttaatttaaaatatatattttattggatacttataagatact 42990633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 5836542 - 5836626
Alignment:
Q  288 tgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatcactataattgttttacgattaaccaattaaaatt 372  Q
    ||||||||||||||| ||||| | |||||  |||||||| | ||||| |||  |||||||||||  |||| ||||| ||||||||    
T  5836542 tgttgtgaaaattcagtgaagatgtatatgattcaattttatatatgtatcggtataattgtttctcgatgaaccacttaaaatt 5836626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 27972008 - 27972072
Alignment:
Q  274 aaaaagtgagtatgtgttgtgaaaattcaatgaaggtatatatagttcaatttaagatatgaatc 338  Q
    ||||||||||| ||| ||||||||||| ||| ||| | ||||   ||||||||||||||||||||    
T  27972008 aaaaagtgagtttgtattgtgaaaatttaataaagatgtataagattcaatttaagatatgaatc 27972072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 394230 - 394277
Alignment:
Q  323 atttaagatatgaatcactataattgttttacgattaaccaattaaaa 370  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  394230 atttaagatatgaatcactataattttttttcgattaaccaattaaaa 394277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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