View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8107_high_1 (Length: 930)
Name: NF8107_high_1
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 247 - 921
Target Start/End: Original strand, 24762740 - 24763423
Alignment:
| Q |
247 |
agggagatatagcatgattaaaaatagttttggcccaatcaacttacttaccaactagcttgaggaacaagtactcatatttaaaagagagatctccata |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24762740 |
agggagatatagcatgattaaaaatagttttggcccaatcaacttacttaccaactagcttgaggaacaagtactcatatttaaaagagagatctccata |
24762839 |
T |
|
| Q |
347 |
ttttaagtataagtccaaattatcttgttttcctcatggaatttagggagaaaaaatatattctgcaaaagagaagaaagatagggtagtgaagaagaag |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24762840 |
ttttaagtataaatccaaattatcttgttttcctcatggaatttagggagaaaaaatatattctgcaaaagagaagaaagatagggtagtgaagaagaag |
24762939 |
T |
|
| Q |
447 |
aa---aatgatggctttccatagctacccatggtcggcacctttttcttctaaccactagcattcaaatttaggat--aatcacatgaatcataccttcc |
541 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24762940 |
aagaaaatgatggctttccatagctacccatggtcggcacctttttcttctaaccactagcattcaaatttaggatgaaatcacatgaatcataccttcc |
24763039 |
T |
|
| Q |
542 |
ctcctaactttattgtctctcatataaaaa-----taaaataaggtgattcggttggaactaagagaatggtggagctgcttggatctaccgcctacaaa |
636 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
24763040 |
ctcataactttattgtctctcatataaaaataaaataaaataaggtgattcggttggaactaagaggatggtggagctgcttggatctgccacctacaaa |
24763139 |
T |
|
| Q |
637 |
ggttgagccaccgatctgtccgtcgtgagcctggttctgttgagctatggtgagatgatgattatggtgatgggatgctttatatttataggtgaacgtt |
736 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24763140 |
ggttgagccaccgatctgtccgccgtgagcctggttctgttgagctatggtgagatgatgattatggtgatgggatgctttatatttataggtgagcgtt |
24763239 |
T |
|
| Q |
737 |
tttctttattttctcaacagtcatcccgcaacgcgaggttgtcatggtgtggcgcgcgttgtgatgagacggtacacaactcaattcctttctaatttca |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24763240 |
tttctttattttctcaacagtcatcccgcaacgcgaggttgtcatggtgtggcgcacgttgtgatgagacggtacacaactcaattcc-ttctaatttca |
24763338 |
T |
|
| Q |
837 |
caacgtgtaggtcatagtgggcatcgtgagtttggccgtggttggacatgcacatttcttcacttcttgctccgtttcttctcac |
921 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24763339 |
caacgtgtaggtcatagtgggcatcatgagtttggccgtggttggacatgcacatttcttcacttcttgctccgtttcttctcac |
24763423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 24762510 - 24762707
Alignment:
| Q |
18 |
aaatcaatctatttacttttcaatgccaatcaacaaatcttgcaaactcctcccaatttacnnnnnnnaattataagtttagtaaattttcaagttgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24762510 |
aaatcaatctatttacttttcaatgcaaatcaacaaatcttgcaaactcctcccaatttactttttttaattataagtttagtaaattttcaagttgaaa |
24762609 |
T |
|
| Q |
118 |
acaacaatccttgggaagacgataatattactactatatcacttgaacggtttgatgcattccaattttgtcatcaagcttactaggcaaaatcctcc |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24762610 |
acaacaatccttgagaagacgataatattactactatatcacttgaacggtttgatgcattccaattttgtcatcatgcttactaggcaaaatcctcc |
24762707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 40117430 - 40117341
Alignment:
| Q |
87 |
attataagtttagtaaattttcaagttgaaaacaacaatccttgggaagacgataatattactactatatcacttgaacggtttgatgca |
176 |
Q |
| |
|
||||||| ||||||||||| || ||| |||||||||||| | || ||||||| |||| ||||||| |||| ||||||| |||||| |||| |
|
|
| T |
40117430 |
attataattttagtaaattatcgagtcgaaaacaacaattcatgtgaagacgttaatcttactacaatattacttgaagggtttggtgca |
40117341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 588 - 706
Target Start/End: Complemental strand, 27913438 - 27913320
Alignment:
| Q |
588 |
ggttggaactaagagaatggtggagctgcttggatctaccgcctacaaaggttgagccaccgatctgtccgtcgtgagcctggttctgttgagctatggt |
687 |
Q |
| |
|
||||||| ||||||| ||| ||||| || |||||||||||||| | ||||| |||||| ||| |||| || |||||||||||||||||||||| |||| |
|
|
| T |
27913438 |
ggttggacctaagaggatgatggagtggcgtggatctaccgcctgtagaggtttagccactgatttgtctgttgtgagcctggttctgttgagctgtggt |
27913339 |
T |
|
| Q |
688 |
gagatgatgattatggtga |
706 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
27913338 |
ggggtgatgattatggtga |
27913320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University