View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_high_11 (Length: 384)

Name: NF8107_high_11
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_high_11
NF8107_high_11
[»] chr5 (5 HSPs)
chr5 (5-333)||(16695722-16696050)
chr5 (93-207)||(16686132-16686246)
chr5 (235-280)||(16686249-16686294)
chr5 (288-332)||(37551211-37551255)
chr5 (292-332)||(37654045-37654085)
[»] chr8 (3 HSPs)
chr8 (23-204)||(25259997-25260178)
chr8 (288-343)||(44134306-44134360)
chr8 (291-333)||(34240692-34240734)
[»] chr4 (5 HSPs)
chr4 (282-331)||(25935078-25935127)
chr4 (288-330)||(49022589-49022631)
chr4 (288-330)||(50051338-50051380)
chr4 (280-309)||(23853115-23853144)
chr4 (291-331)||(36539604-36539644)
[»] chr6 (3 HSPs)
chr6 (288-333)||(24121959-24122004)
chr6 (288-333)||(6532034-6532079)
chr6 (288-333)||(21384319-21384364)
[»] chr7 (1 HSPs)
chr7 (288-332)||(12257449-12257493)
[»] chr3 (1 HSPs)
chr3 (287-343)||(19276331-19276386)
[»] chr2 (1 HSPs)
chr2 (288-328)||(10291581-10291621)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 16695722 - 16696050
Alignment:
Q  5 agtttggtgttaggtgtttgtccattttcattgcttgtgacattggaaagattgataattgacctgttggaatgaatgttatgatgcctgttacccatat 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16695722 agttttgtgttaggtgtttgtccattttcattgcttgtgacattggaaagattgataattgacctgttggaatgtatgttatgatgcctgttacccatat 16695821  T
Q  105 tggcatcattttaagtatgcattttaattcttcaacttgttggatgctacaaagtctccaaggattattgtttgaaccatcatcattcaattcattctcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16695822 tggcatcattttaagtatgcattttaattcttcaacttgttggatgctacaaagtctccaaggattattgtttgaaccatcatcattcaattcattctcc 16695921  T
Q  205 accataatagctgctttgtttaaacacctgaagaaataaaattcaagcatacaataggttgatcaatatcacttcaatattgaaccgtcaatatattcct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16695922 accataatagctgctttgtttaaacacctgaagaaataaaattcaagcatacaataggttgatcaatatcacttcaatattgaaccgtcaatatattcct 16696021  T
Q  305 aagggtctaagagccctctagaaaggctt 333  Q
    |||||||||||||||||||||||||||||    
T  16696022 aagggtctaagagccctctagaaaggctt 16696050  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 16686132 - 16686246
Alignment:
Q  93 tgttacccatattggcatcatttta-agtatgcattttaattcttcaacttgttggatgctacaaagtctccaaggattattgtttgaaccatcatcatt 191  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||||||| ||||||||||||||||| ||| ||  |||||||  ||| |||||||||||    
T  16686132 tgttacccatattggcatcatttttgagtatg-atttgaattcttcaacgtgttggatgctacaaagcctctaaatattattgcatgagccatcatcatt 16686230  T
Q  192 caattcattctccacc 207  Q
    ||||||||||||||||    
T  16686231 caattcattctccacc 16686246  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 16686249 - 16686294
Alignment:
Q  235 aagaaataaaattcaagcatacaataggttgatcaatatcacttca 280  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  16686249 aagaaataaaatttaagcatacaatagattgatcaatataacttca 16686294  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 37551211 - 37551255
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggct 332  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||    
T  37551211 accgtcaatatattcctaagggtctaaaagctatctagaaaggct 37551255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 37654045 - 37654085
Alignment:
Q  292 tcaatatattcctaagggtctaagagccctctagaaaggct 332  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  37654045 tcaatatattcctaagggtctaaaagctatctagaaaggct 37654085  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 25260178 - 25259997
Alignment:
Q  23 tgtccattttcattgcttgtgacattggaaagattgataattgacctgttggaatgaatgttatgatgcctgttacccatattggcatcattttaagtat 122  Q
    |||||||||| |  |||||||| |||| ||| |||| || ||| ||| ||||||||     |||||||| |||||||||||||||||| |||||||| ||    
T  25260178 tgtccatttttaaggcttgtgatattgaaaatattgttagttgtcctattggaatgttgactatgatgcttgttacccatattggcattattttaagcat 25260079  T
Q  123 gcattttaattcttcaacttgttggatgctacaaagtctccaaggattattgtttgaaccatcatcattcaattcattctcc 204  Q
    ||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||| |||  |||||||  |||||||||||||||    
T  25260078 gcactttaattcttcaatttgttggatgctacatagtctccatggatttttgcttgttccatcattgttcaattcattctcc 25259997  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 44134360 - 44134306
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggctttaggagccct 343  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||    
T  44134360 accgtcaatatattcctaagggtctaaaagcactctagaaagg-tttaggtgccct 44134306  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 34240692 - 34240734
Alignment:
Q  291 gtcaatatattcctaagggtctaagagccctctagaaaggctt 333  Q
    ||||||||||||||||||| |||| |||||||| |||||||||    
T  34240692 gtcaatatattcctaagggcctaaaagccctctggaaaggctt 34240734  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 25935078 - 25935127
Alignment:
Q  282 tattgaaccgtcaatatattcctaagggtctaagagccctctagaaaggc 331  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  25935078 tattggaccgtcaatatattcctaagggcctaaaagccctctagaaaggc 25935127  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 49022589 - 49022631
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaagg 330  Q
    ||||||||||||||| |||||| |||| |||||||||||||||    
T  49022589 accgtcaatatattcttaagggcctaaaagccctctagaaagg 49022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 50051380 - 50051338
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaagg 330  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  50051380 accgtcaatatattcctaagggcctaaaatccctctagaaagg 50051338  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Original strand, 23853115 - 23853144
Alignment:
Q  280 aatattgaaccgtcaatatattcctaaggg 309  Q
    ||||||||||||||||||||||||||||||    
T  23853115 aatattgaaccgtcaatatattcctaaggg 23853144  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 36539644 - 36539604
Alignment:
Q  291 gtcaatatattcctaagggtctaagagccctctagaaaggc 331  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  36539644 gtcaatatattcctaagggcctaaaatccctctagaaaggc 36539604  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 24121959 - 24122004
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggctt 333  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||    
T  24121959 accgtcaatatattcctaagggtctgaaagccctctagataggctt 24122004  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 6532079 - 6532034
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggctt 333  Q
    ||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  6532079 accgtcaatatattcttaagggtctaaaagttctctagaaaggctt 6532034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 21384364 - 21384319
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggctt 333  Q
    ||||||||||||||| ||||||||| | |||| |||||||||||||    
T  21384364 accgtcaatatattcttaagggtctgaaagccttctagaaaggctt 21384319  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 12257493 - 12257449
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaaggct 332  Q
    ||||||||||||||| |||||| || | |||||||||||||||||    
T  12257493 accgtcaatatattcataagggcctgaaagccctctagaaaggct 12257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 19276331 - 19276386
Alignment:
Q  287 aaccgtcaatatattcctaagggtctaagagccctctagaaaggctttaggagccct 343  Q
    ||||| ||||||||||||||||| |||| |||||||||| |||| |||||| |||||    
T  19276331 aaccgacaatatattcctaagggactaaaagccctctaggaagg-tttaggcgccct 19276386  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 10291581 - 10291621
Alignment:
Q  288 accgtcaatatattcctaagggtctaagagccctctagaaa 328  Q
    |||||||||||||||||||||| |||| | |||||||||||    
T  10291581 accgtcaatatattcctaagggcctaaaaaccctctagaaa 10291621  T

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