View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_12 (Length: 382)
Name: NF8107_high_12
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 33683076 - 33682901
Alignment:
| Q |
178 |
tacaagtaaatatattgaaccggacaaagttaatactggtattattttcaatccaaaaaatgcattggtctgtcctttttcttcttacttaacaatacta |
277 |
Q |
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| T |
33683076 |
tacaagtaaatatactgaaccggacaaagttaatactggtattattttcaatccaaaaaatgcattggtctgtcctttttcttcttacttaacaa---ta |
33682980 |
T |
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| Q |
278 |
taaaataagaaaaatctaagacaacacctcacaatttcccatggccggacaaacagtaaacaatgcaaaactggtagtt |
356 |
Q |
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| T |
33682979 |
taaaataagaaaaatctaagacaacacctcacaatttcccatggccggacaaacagtaaacaatgcaaaactggtagtt |
33682901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 33687171 - 33687016
Alignment:
| Q |
31 |
gtttgaaattatttaaccaagtctttaagtgttataagatttctcgtatacttaatatataaacaaaaagctacctacacgaggattttcactatcttaa |
130 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33687171 |
gtttgatattatttaaccaagtctttaagtgttagaagatttctcgtatacttaatatataaacaaaaagctacctacacgaggattttcactatcttga |
33687072 |
T |
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| Q |
131 |
aagagttttcgaaatgatttaaacaaaatattgtttgttgagtataatacaagtaa |
186 |
Q |
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| T |
33687071 |
aagagttttcgaaatgatttaaacaaaatattgtttgttgagtataatacaagtaa |
33687016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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