View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_high_13 (Length: 372)

Name: NF8107_high_13
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_high_13
NF8107_high_13
[»] chr2 (1 HSPs)
chr2 (1-355)||(41079828-41080185)
[»] chr4 (4 HSPs)
chr4 (135-354)||(23072868-23073087)
chr4 (135-354)||(23077473-23077692)
chr4 (135-354)||(23111250-23111469)
chr4 (50-118)||(23072792-23072860)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41079828 - 41080185
Alignment:
Q  1 aagtttgagtttgaaagtgcttggatcttgaatattgttaatccaaccgtacttctccatgaatgggttggccaaagagtgtggtggatagtaatcaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079828 aagtttgagtttgaaagtgcttggatcttgaatattgttaatccaaccgtacttctccatgaatgggttggccaaagagtgtggtggatagtaatcaatg 41079927  T
Q  101 caatcgtcccacacatt---tctatcatcaccaacaacaacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatca 197  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079928 caatcgtcccacacattatttctatcatcaccaacaacaacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatca 41080027  T
Q  198 tcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080028 tcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatga 41080127  T
Q  298 cattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccatct 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080128 cattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccatct 41080185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 23072868 - 23073087
Alignment:
Q  135 caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc 234  Q
    |||||||| |||| ||||||||  | ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || ||    
T  23072868 caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgc 23072967  T
Q  235 ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct 334  Q
    |||||| ||||| |||||||||||||| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | ||||    
T  23072968 ttccatgtaccctaacacataccacaagctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatct 23073067  T
Q  335 aaactcatcccaattccatc 354  Q
    |||||||| |||||||||||    
T  23073068 aaactcattccaattccatc 23073087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 23077473 - 23077692
Alignment:
Q  135 caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc 234  Q
    |||||||| |||| ||||||||  | ||||| ||||||||||| |||||||| || |||||||| || ||||| ||||||||||| | |||||| || ||    
T  23077473 caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcacctttttttagcctctttttggc 23077572  T
Q  235 ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct 334  Q
    |||||| ||||| |||||||||||||||||||  || || ||||||||||| | ||||| || ||| ||||| || || || ||||| ||| | ||||||    
T  23077573 ttccatgtaccctaacacataccacaaactaccagcagaagtgttaccaaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttagatct 23077672  T
Q  335 aaactcatcccaattccatc 354  Q
    |||||| | |||| ||||||    
T  23077673 aaactctttccaactccatc 23077692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 354
Target Start/End: Complemental strand, 23111469 - 23111250
Alignment:
Q  135 caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc 234  Q
    |||||||| |||| ||||||||  | ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || ||    
T  23111469 caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgc 23111370  T
Q  235 ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct 334  Q
    |||||| ||||| |||||||||||||| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | ||||    
T  23111369 ttccatgtaccctaacacataccacaagctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatct 23111270  T
Q  335 aaactcatcccaattccatc 354  Q
    |||||||| |||||||||||    
T  23111269 aaactcattccaattccatc 23111250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 23072792 - 23072860
Alignment:
Q  50 tacttctccatgaatgggttggccaaagagtgtggtggatagtaatcaatgcaatcgtcccacacattt 118  Q
    |||||||||||||| || ||| ||||||| | ||||||||| | |||||| ||||| ||||| ||||||    
T  23072792 tacttctccatgaaaggattgaccaaagactttggtggataattatcaatacaatcttcccaaacattt 23072860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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