View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_15 (Length: 369)
Name: NF8107_high_15
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 22589076 - 22588737
Alignment:
| Q |
20 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgatagaagacttgctactatacaagtaagactca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22589076 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgatagaagacttgctactatacaagtaagactca |
22588977 |
T |
|
| Q |
120 |
acgacatacataattgttttccttggtttctttctatttaattttccttcatttatcttgccctagacatttcataatggagatatatttttcttgtgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588976 |
acgacatacataattgttttccttggtttctttctatttaattttccttcatttatcttgccctagacatttcataatggagatatatttttcttgtgtg |
22588877 |
T |
|
| Q |
220 |
tgtgtttttgggaactgaaaatgaattattttctatcttgaaatcactttgttatggatctattgacttggtttactacccaattggtttttgggctggc |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588876 |
tgtgtttttgggaactgaaaatgaatgattttctatcttgaaatcactttgttatggatctattgacttggtttactacccaattggtttttgggctggc |
22588777 |
T |
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| Q |
320 |
cggtatatttggctctgcagtgtttatggggttttctctg |
359 |
Q |
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| T |
22588776 |
cggtatatttggctctgcagtgtttatggggttttctctg |
22588737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 30936579 - 30936845
Alignment:
| Q |
20 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgatagaagacttgctactatacaagtaagactca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30936579 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggaattgatagaagacttgctactatacaagtaagactca |
30936678 |
T |
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| Q |
120 |
acgacatacataattgttttccttgg--------tttctttctatttaattttccttcatttatcttgccctagacatttcataatggagatatattttt |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
30936679 |
acgacatacataattgttttccttggtttctttctttctttctatttaattttccttcatttatcttgccctggacatttcataatggagctatattttt |
30936778 |
T |
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| Q |
212 |
cttgtgtgtgtgtttttgggaactgaaaatgaattattttctatcttgaaatcactttgttatggat |
278 |
Q |
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| T |
30936779 |
cttgtgtgtgtgtttttgggaactgaaaatgtattgttttctatcttgaaatcactttgttatggat |
30936845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 18365705 - 18365925
Alignment:
| Q |
20 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgatagaagacttgctactatacaagtaagactca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18365705 |
atgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgatagaag---------------------actca |
18365783 |
T |
|
| Q |
120 |
acgacatacataattgttttccttggtttctttctat--------ttaattttccttcatttatcttgccctagacatttcataatggagatatattttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
18365784 |
acgacatacataattgttttccttggtttctttctttctttctttttaattttccttcgtttatcttgccctggacatttcataatggagctatattttt |
18365883 |
T |
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| Q |
212 |
cttgtgtgtgtgtttttgggaactgaaaatgaattattttct |
253 |
Q |
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| T |
18365884 |
cttgtgtgtgtgtttttgggaactgaaaatgaattgttttct |
18365925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 18366015 - 18365946
Alignment:
| Q |
290 |
gtttactacccaattggtttttgggctggccggtatatttggctctgcagtgtttatggggttttctctg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18366015 |
gtttactacccaattggtttttgggctggccggtatttttggctctgcagtgtttatggggttttctctg |
18365946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 30936845 - 30936908
Alignment:
| Q |
296 |
tacccaattggtttttgggctggccggtatatttggctctgcagtgtttatggggttttctctg |
359 |
Q |
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|||||| |||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||| |
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| T |
30936845 |
tacccagttggtttttgggctggtcggtattttgggctctgcaatgtttatgggattttctctg |
30936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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