View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_18 (Length: 344)
Name: NF8107_high_18
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 7160309 - 7160611
Alignment:
| Q |
20 |
aacctgggttgcgcacggtagctcgaactgtgtagccgcgctccataagcctcataacaagccacgacccgatgaaacctgaagcccctgtgacgcaaac |
119 |
Q |
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| T |
7160309 |
aacctgggtcgcgcacggtggctcgaactgtgtagccgcgctccataagtctcataacaagccacgacccgatgaaacctgaagcccctgtgacgcaaac |
7160408 |
T |
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| Q |
120 |
tgtttctgagactgaacccatgtatatattttgaacggaagaaaatgtatgtggtaggtgactctatttatttagaaagaagctgttgtaaactaaagag |
219 |
Q |
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| T |
7160409 |
tgtttctgagactgaacccatgtatatattttgaacggaagacaatgtatgtggtgggtgactctatttatttagaaagaagctgttg-----taaagag |
7160503 |
T |
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| Q |
220 |
agaggaatgaagagaaacctgagctgatgagagtaagaaaatgtaaggggtttatatagtatgaagtgacgtgaaggaaatgtaaggatattaaggaatg |
319 |
Q |
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| T |
7160504 |
agaggaatgaagagaaacctgagctgatgagagtaagaaaatgtaaggggtttatatagtatgaagtgacgtgaaggaaatgtaaggatattaaggaatg |
7160603 |
T |
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| Q |
320 |
tatgaagt |
327 |
Q |
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|||||||| |
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| T |
7160604 |
tatgaagt |
7160611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 7166948 - 7167052
Alignment:
| Q |
21 |
acctgggttgcgcacggtagctcgaactgtgtagccgcgctccataagcctcataacaagccacgacccgatgaaacctgaagcccctgtgacgcaaact |
120 |
Q |
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|||||||| ||| || || |||||||| |||| |||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
7166948 |
acctgggtcgcggactgttgctcgaaccatgtaaccgcgctccataagtctcatgacaagccatgacccgataaaacctgaagcccctgtgacacaaaca |
7167047 |
T |
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| Q |
121 |
gtttc |
125 |
Q |
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| T |
7167048 |
gtttc |
7167052 |
T |
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