View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_high_2 (Length: 503)

Name: NF8107_high_2
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_high_2
NF8107_high_2
[»] chr2 (1 HSPs)
chr2 (1-488)||(41247438-41247926)
[»] chr4 (2 HSPs)
chr4 (1-488)||(10707986-10708475)
chr4 (1-488)||(10921756-10922245)
[»] scaffold0032 (1 HSPs)
scaffold0032 (15-432)||(125805-126222)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-472)||(43207-43679)
[»] chr1 (1 HSPs)
chr1 (1-472)||(21489773-21490245)
[»] chr5 (1 HSPs)
chr5 (7-189)||(21028593-21028775)
[»] chr7 (1 HSPs)
chr7 (443-486)||(12161181-12161224)
[»] chr6 (2 HSPs)
chr6 (443-486)||(15157192-15157235)
chr6 (443-486)||(15144242-15144285)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 41247438 - 41247926
Alignment:
Q  1 taatagacagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaatatatccccttcggtttgcctttaaaaatggg 100  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  41247438 taatagacagcaaagtacatttccaaattgcaaattttaccttgattctgtcaacaattgattgaaaatatatccccttcagtttgcctttaaaaatggg 41247537  T
Q  101 gcagccaagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactga 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41247538 gcagccaagatagaaaaaaggaatattatcagcactaaaacccaacgttcccgcaatcatttgagaatgagaggttgtcatagctcccgcataaaactga 41247637  T
Q  201 ttgttgctgttgttaataatttga-cggacacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatta 299  Q
     | ||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41247638 ctcttgttgttgttaataatttgcgcggacacctcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatta 41247737  T
Q  300 acacatcatccacatacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccct 399  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41247738 acacatcatccgcatacaaaatgtgagtaggaatagaagccccacgacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccct 41247837  T
Q  400 actgagaacctcttcagcaatacaaaagcgaagcataggtaaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactg 488  Q
     ||||||||||||||||||||||| ||| |||||  || |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  41247838 gctgagaacctcttcagcaatacataagagaagcggagataaagggtcaccttgtcagacaccacgagaacaagagaaaaaacccactg 41247926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 10707986 - 10708475
Alignment:
Q  1 taatagacagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaata-tatccccttcggtttgcctttaaaaatgg 99  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||||||||    
T  10707986 taatagatagcaaagtccctttccaagttgcaaatttaaccttgattctgtcaacaatggattgaaaaaaatatccctttcagtttgcctttaaaaatgg 10708085  T
Q  100 ggcagccaagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactg 199  Q
    ||||||||||| || ||||||||||  ||||||||||||| |||| |||| | |||||||| |||||||||||||||||||| || |||||||| ||| |    
T  10708086 ggcagccaagaaaggaaaaaggaatggtaccagcactaaaccccagcattccagcaatcatctgagaacgagaggttgtcatcgcccccgcatataaccg 10708185  T
Q  200 attgttgctgttgttaataatttg-acggacacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatt 298  Q
    | | ||| |||| |||||||| || | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10708186 actcttgttgttattaataatctgtatggacacctcaaaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacccgcacaaaatatt 10708285  T
Q  299 aacacatcatccacatacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccc 398  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||  || ||||||||||||||||    
T  10708286 aacacatcatccgaatacaaaatgtgagtaggaatagaagccccacgacaatagaacataggcacaatctttcccacatatgaggccatggaaatcgccc 10708385  T
Q  399 tactgagaacctcttcagcaatacaaaagcgaagcataggtaaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactg 488  Q
    | || |||||||||||||||||||| ||| |||||  || |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  10708386 tgcttagaacctcttcagcaatacagaagagaagcggagataaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactg 10708475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 10921756 - 10922245
Alignment:
Q  1 taatagacagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaata-tatccccttcggtttgcctttaaaaatgg 99  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||||||||    
T  10921756 taatagatagcaaagtccctttccaagttgcaaatttaaccttgattctgtcaacaatggattgaaaaaaatatccctttcagtttgcctttaaaaatgg 10921855  T
Q  100 ggcagccaagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactg 199  Q
    ||||||||||| || ||||||||||  ||||||||||||| |||| |||| | |||||||| |||||||||||||||||||| || |||||||| ||| |    
T  10921856 ggcagccaagaaaggaaaaaggaatggtaccagcactaaaccccagcattccagcaatcatctgagaacgagaggttgtcatcgcccccgcatataaccg 10921955  T
Q  200 attgttgctgttgttaataatttg-acggacacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatt 298  Q
    | | ||| |||| |||||||| || | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10921956 actcttgttgttattaataatctgtatggacacctcaaaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacccgcacaaaatatt 10922055  T
Q  299 aacacatcatccacatacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccc 398  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||  || ||||||||||||||||    
T  10922056 aacacatcatccgaatacaaaatgtgagtaggaatagaagccccacgacaatagaacataggcacaatctttcccacatatgaggccatggaaatcgccc 10922155  T
Q  399 tactgagaacctcttcagcaatacaaaagcgaagcataggtaaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactg 488  Q
    | || |||||||||||||||||||| ||| |||||  || |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  10922156 tgcttagaacctcttcagcaatacagaagagaagcggagataaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactg 10922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 126222 - 125805
Alignment:
Q  15 gtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaatatatccccttcggtttgcctttaaaaatggggcagccaagataga 114  Q
    ||||||||||| |||||||  |||||||| ||||  || |||||  || | || || ||||| ||||| |||||||| ||||| ||||||||||||||      
T  126222 gtacctttccacgttgcaatctttacctttattccatcgacaataaattggaagtagatccctttcggcttgcctttgaaaatagggcagccaagataag 126123  T
Q  115 aaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactgattgttgctgttgtt 214  Q
     |||||||||  ||||| ||||||| || | | || |||||||||| |||||||||||||| |||||||| |||  ||||||| || | ||||| || ||    
T  126122 taaaaggaatggtaccatcactaaacccgagctttcccgcaatcatatgagaacgagaggtcgtcatagcccccaaataaaaccgacttttgctattatt 126023  T
Q  215 aataatttg-acggacacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatattaacacatcatccaca 313  Q
     ||||| || || ||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||||   ||    
T  126022 gataatctgcacagacacctcagaatattcattaaaaaatttcagtaaacatctaatattttgtttagtacctgcacaaaatattagaacatcattggca 125923  T
Q  314 tacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccctactgagaacctctt 413  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||   | ||||| ||||| ||||| || ||| ||||||    
T  125922 tacaaaatgtga-taggaatagaagtcccacgacaataaaacataggcacaatctttcccgcataacaagccatagaaattgccctgctaagatcctctt 125824  T
Q  414 cagcaatacaaaagcgaag 432  Q
    ||| |||||| ||| ||||    
T  125823 cagaaatacagaagagaag 125805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 43207 - 43679
Alignment:
Q  1 taatagacagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaatatatccccttcggtttgcctttaaaaatggg 100  Q
    |||| |||| ||||||||| ||||| || |||||||| |||||||||||||||| |||| || |||||||  |||| ||||| || ||||| ||||||||    
T  43207 taattgacaacaaagtacccttccacgtagcaaatttaaccttgattctgtcaataatgtattgaaaataagtccctttcggcttacctttgaaaatggg 43306  T
Q  101 gcagccaagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactga 200  Q
    ||| || |||||  ||||||||||  | ||| ||||||| || | |||| |||||||||| || || ||||||| ||||||||| | ||    |||| ||    
T  43307 gcatcctagataagaaaaaggaatggttccaacactaaacccaagcattcccgcaatcatctgtgaccgagaggatgtcatagccctcgagagaaaccga 43406  T
Q  201 ttgttgctgttgttaataatttgacgga-cacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatta 299  Q
     | || || ||||| ||||| || |  | ||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  43407 cttttactattgtttataatctgccccaacacctcagagtagtcatgaaaaattttcagcaagcatctaatattttgtttagtacctacacaaaaaatta 43506  T
Q  300 acacatcatccacatacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccct 399  Q
      || || ||  |||| |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||   | |||||||| ||||||||    
T  43507 gaacgtcgtctgcatataaaatgtgtgtaggaacagaagtcccacgacaataaaaaataggcacaatcttgcccgcataacaagccatggagatcgccct 43606  T
Q  400 actgagaacctcttcagcaatacaaaagcgaagcataggtaaagggtcaccttgtcgaacaccacgagaacaa 472  Q
     ||   ||||||||| |||||||||||| |||||  || || |||||| || ||||| || ||||||||||||    
T  43607 gctctaaacctcttccgcaatacaaaagagaagcggagatagagggtccccctgtcggactccacgagaacaa 43679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 21489773 - 21490245
Alignment:
Q  1 taatagacagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaatatatccccttcggtttgcctttaaaaatggg 100  Q
    |||| |||||||||||||| ||||| || |||||||| ||||||||| |||||| |||   | |||||||  |||| ||||| || ||||| ||||||||    
T  21489773 taattgacagcaaagtacccttccacgtagcaaatttaaccttgattatgtcaataatatcttgaaaataagtccctttcggcttacctttgaaaatggg 21489872  T
Q  101 gcagccaagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccgcataaaactga 200  Q
    ||| || |||||  ||||||||||  | ||||||||||| || | |||| |||||||||| || || ||||||| ||||||||| || |   ||||| ||    
T  21489873 gcatccgagataagaaaaaggaatggttccagcactaaacccaagcattcccgcaatcatctgtgaccgagaggatgtcatagcccctgagaaaaaccga 21489972  T
Q  201 ttgttgctgttgttaataatttgacg-gacacttcagaatagtcattaaaaaatttcagcaagcatctaatattttgtttagtacctgcacaaaatatta 299  Q
     | || || ||||| ||||| || |  ||||| ||||| |||||||  |||| ||| ||||||| ||||||||||||||| |||||||||||||| ||||    
T  21489973 cttttactattgtttataatctgccccgacacctcagagtagtcatggaaaatttttagcaagcgtctaatattttgtttggtacctgcacaaaaaatta 21490072  T
Q  300 acacatcatccacatacaaaatgtgagtaggaatagaagccccacaacaataaaacataggcacaatcttgcccgcatgggatgccatggaaatcgccct 399  Q
      || || ||  |||| |||||||| ||||||||||| |  |||  ||||||  ||||||||| |||||||||| | |  || | |||| ||||||||||    
T  21490073 gaacgtcgtctgcatataaaatgtgtgtaggaatagaggtaccatgacaatatgacataggcagaatcttgccctcgtaagaagtcatgcaaatcgccct 21490172  T
Q  400 actgagaacctcttcagcaatacaaaagcgaagcataggtaaagggtcaccttgtcgaacaccacgagaacaa 472  Q
     || | ||||||||| |||||||||||| |||||  || ||||||||| || | ||| || || |||||||||    
T  21490173 gctcaaaacctcttccgcaatacaaaagagaagcggagataaagggtccccctatcggactccccgagaacaa 21490245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 21028593 - 21028775
Alignment:
Q  7 acagcaaagtacctttccaagttgcaaattttaccttgattctgtcaacaatggatcgaaaatatatccccttcggtttgcctttaaaaatggggcagcc 106  Q
    ||||||||||||||||||| || |||||||| ||||||||||| |||| |||| || |||||||  |||| ||||| || ||||| |||||||||||       
T  21028593 acagcaaagtacctttccacgtagcaaatttaaccttgattctatcaataatgtattgaaaataagtccctttcggcttacctttgaaaatggggcattt 21028692  T
Q  107 aagatagaaaaaaggaatattaccagcactaaaacccaacatttccgcaatcatttgagaacgagaggttgtcatagctcccg 189  Q
     |||||  |||||||||   | ||||||||||| || | |||| |||||||||| || || ||||||| ||||||||| ||||    
T  21028693 gagataagaaaaaggaaaggtgccagcactaaacccaagcattcccgcaatcatctgtgaccgagaggatgtcatagcccccg 21028775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 12161224 - 12161181
Alignment:
Q  443 gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccac 486  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  12161224 gggtctccttgtcgaacaccacaagaacaagagaaaaaacccac 12161181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 15157235 - 15157192
Alignment:
Q  443 gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccac 486  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  15157235 gggtctccttgtcgaacaccacaagaacaagagaaaaaacccac 15157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 15144242 - 15144285
Alignment:
Q  443 gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccac 486  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||    
T  15144242 gggtccccttgtcgaacaccacgagagcaagagaaaaatcccac 15144285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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