View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8107_high_20 (Length: 330)
Name: NF8107_high_20
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9901611 - 9901300
Alignment:
| Q |
1 |
taatgtaactgcttcatatgttaatgtagctgcagtgataataaataacatgtgtttattttctcaataatatggtatcgagttaaacaaaagtaacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9901611 |
taatgtaactgcttcatatgttaatgtagctgcagtgataataaataacatgtgtttattttctcaataatatggtatcgagttaaacaaaagtaacatt |
9901512 |
T |
|
| Q |
101 |
tatttttgcaatacccctaatatttgtattaaaaagacatctttcaaagttaactttagaaataaaaatatactcctatggatgaggatgggctaatggt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9901511 |
tatttttgcaataccccaaatatttgtattaaaaagacatctttcaaagttaactttagaaataaaaatatactcctatggatgaggatgggctaatggt |
9901412 |
T |
|
| Q |
201 |
ccctcatctaaatatctggtggcatatctctttgaacatgtattggtgtcctggtttattccttttgattgttaatttagttttgttgtttcctaaacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9901411 |
ccctcatctaaatatctggtggcatatctctttgaacatgtattggtgtcctggtttattccttttgattgttaatttagttttgttgtttcctaaacta |
9901312 |
T |
|
| Q |
301 |
tgatgttggtaa |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9901311 |
tgatgttggtaa |
9901300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University