View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8107_high_21 (Length: 324)
Name: NF8107_high_21
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 6998085 - 6998309
Alignment:
| Q |
90 |
ttaaaaatgcatatctttatatgtgtattacgtataaacactatacatccaatcttgtgaacacacaagtccaaaatgtacctaacctaaaaatatattt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6998085 |
ttaaaaatgcatatctttatatgtgtattgcgtataaacactatacatccaatcttgtgaacacacaaatccaaaatgtacctaacctaaaaatatattt |
6998184 |
T |
|
| Q |
190 |
tttagtagacctaaaagaaattgttgactatacataatattgtaacttttagtctttcaaataataaataaatacacgatacatttttcagttccacgag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6998185 |
tttagtagacctaaaagaaattgttgactatacataatattgtaacttttagtctttcaaataataaataaatacacgatacatttttcagttccacgag |
6998284 |
T |
|
| Q |
290 |
tgtt-atcctgtcaatggtcttctt |
313 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
6998285 |
tgttaatcctgtcaatggtcttctt |
6998309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 6995067 - 6995138
Alignment:
| Q |
2 |
gacttgaccgtaaatactaaacctgcagagataaatttttgagttatgcaatatgattcgattcttgggtgg |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6995067 |
gacttgaccgtaaatactaaacctgcagagataaatttttgagttatgcaatatgattcgattcttgggtgg |
6995138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University