View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_22 (Length: 297)
Name: NF8107_high_22
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 9194790 - 9195059
Alignment:
| Q |
10 |
gaagcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttat |
109 |
Q |
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| T |
9194790 |
gaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttat |
9194889 |
T |
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| Q |
110 |
ctgatgcagtagattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaa |
209 |
Q |
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| T |
9194890 |
ctgatgcagtagattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaa |
9194989 |
T |
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| Q |
210 |
aattgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaag |
279 |
Q |
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| T |
9194990 |
aattgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaag |
9195059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 9213240 - 9212990
Alignment:
| Q |
10 |
gaagcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttat |
109 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
9213240 |
gaagcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttat |
9213141 |
T |
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| Q |
110 |
ctgatgcagtagattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaa |
209 |
Q |
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| T |
9213140 |
cagatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatgga |
9213041 |
T |
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| Q |
210 |
aattgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaa |
260 |
Q |
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| T |
9213040 |
aattgtcgataataacagtgcaacgacaacttcaactgtggtagaccaaaa |
9212990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 28081128 - 28081217
Alignment:
| Q |
9 |
agaagcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagc |
98 |
Q |
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|||||||||||||||||| ||||| || || ||||| | |||||||||| || | ||||||||||||| ||||| |||||||| ||||| |
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| T |
28081128 |
agaagcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagc |
28081217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 17370997 - 17371053
Alignment:
| Q |
121 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
177 |
Q |
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| T |
17370997 |
gattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 24748746 - 24748802
Alignment:
| Q |
121 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
177 |
Q |
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| T |
24748746 |
gattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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