View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_23 (Length: 286)
Name: NF8107_high_23
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 163324 - 163073
Alignment:
| Q |
14 |
acatcagcctacatcatattctttggtggcaatctagtctcatggctatcaaagaaatnnnnnnnnttgttgcaagatcttcaacagaaagctgattaca |
113 |
Q |
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| T |
163324 |
acatcagcctacatcatattctttggtggcaatctaatctcatggctatcaaagaaataaaaaaaattgttgcaagatcttcaacagaaagctgattaca |
163225 |
T |
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| Q |
114 |
cgaaagttccaacaatgacatttgagctcatgtagctcaccaatcttcttactgatttgcaaatatcaacggctcatgctcctaaagtcttgactgatga |
213 |
Q |
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| T |
163224 |
cgaaagttccaa---tgacatttgagctcacgtagctcaccaatcttcttacttatttgcaaatatcaacggctcatgctcctaaagtcttgactgatga |
163128 |
T |
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| Q |
214 |
gtaacatacaatagcttactatgagttccgtgaagtcttacacacaagactcaaa |
268 |
Q |
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| T |
163127 |
gtaacatacaatagcttactataagttccgtgaagtcttacacacaagactcaaa |
163073 |
T |
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