View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8107_high_26 (Length: 270)
Name: NF8107_high_26
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18951053 - 18951147
Alignment:
| Q |
1 |
atgtgatttaacaaccactcgtgtgttataagttataacctaagaactaaagtttttgggatagtacattcatgataattatcattatacttgtt |
95 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18951053 |
atgtaatttaacaaccactagtgtgttataagttataacctaagaactaaagtttttgggatagtacattcatgataattatcattatacttgtt |
18951147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 18951224 - 18951302
Alignment:
| Q |
158 |
tgatggatgataaggtgttgaaaacataagacagaacatgatcaattacctcttcctcttcctcttcatgtcccaatga |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18951224 |
tgatggatgataaggtgttgaaaacataagacagaacatgatcaaatacctcttcctcttcctcttcatatcccaatga |
18951302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University