View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_29 (Length: 253)
Name: NF8107_high_29
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 16867209 - 16867429
Alignment:
| Q |
24 |
agtttgaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagc |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867209 |
agtttgaattacaaagtttagataacataagtattaattttgacatttaagcagtagggtatgatgcttgcattgcaatgccacaaagtccttcagcagc |
16867308 |
T |
|
| Q |
124 |
atcaacacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacacca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867309 |
atcaacacctctttgcatcataatgtatccttcttcaccccattcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacacca |
16867408 |
T |
|
| Q |
224 |
taacccacggcggtaacacca |
244 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
16867409 |
taacccacggcggtaacacca |
16867429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 44730828 - 44731042
Alignment:
| Q |
30 |
aattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaac |
129 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| | |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
44730828 |
aattacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccac |
44730927 |
T |
|
| Q |
130 |
acctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataaccc |
229 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
44730928 |
tcccctttgcatcctaatgtatccttcttcgccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataaccc |
44731027 |
T |
|
| Q |
230 |
acggcggtaacacca |
244 |
Q |
| |
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|| ||||| |||||| |
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| T |
44731028 |
acagcggtgacacca |
44731042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 30881968 - 30881753
Alignment:
| Q |
29 |
gaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaa |
128 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||| |||| | |||||||||||| || ||||||| |||||||||||||||||||||||| || ||||| | |
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| T |
30881968 |
gaattacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcga |
30881869 |
T |
|
| Q |
129 |
cacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacc |
228 |
Q |
| |
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| || ||||||||| ||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
30881868 |
ctcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacaccataacc |
30881769 |
T |
|
| Q |
229 |
cacggcggtaacacca |
244 |
Q |
| |
|
||||| || |||||| |
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|
| T |
30881768 |
tacggctgtgacacca |
30881753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 30719394 - 30719606
Alignment:
| Q |
32 |
ttacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacac |
131 |
Q |
| |
|
||||| ||||||| ||||||| | ||||| |||| | |||||||||||| || ||||||| |||||||||||||||||||||||| || ||||| || | |
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|
| T |
30719394 |
ttacatagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactc |
30719493 |
T |
|
| Q |
132 |
ctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacccac |
231 |
Q |
| |
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| ||||||||| ||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||| ||||||||||| || |
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|
| T |
30719494 |
ccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacaccataacctac |
30719593 |
T |
|
| Q |
232 |
ggcggtaacacca |
244 |
Q |
| |
|
||| || |||||| |
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|
| T |
30719594 |
ggctgtgacacca |
30719606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 30893030 - 30892836
Alignment:
| Q |
50 |
ataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgt |
149 |
Q |
| |
|
|||||||| || |||| | || ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| || | ||||||||| |||||| |
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| T |
30893030 |
ataagtatcaagtttgtctttcaagcagtgggataagatgccatcattgcaatgccacaaagtccttgagcagcatctacgctcctttgcatcctaatgt |
30892931 |
T |
|
| Q |
150 |
atccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacccacggcggtaacacca |
244 |
Q |
| |
|
||||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||| |
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|
| T |
30892930 |
atccttcttcaccccaatcatttccccatgaattcttaaccaaccaatacttggttccatcattactaatgccataacccacagcagtaacacca |
30892836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 8899585 - 8899369
Alignment:
| Q |
27 |
ttgaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatc |
126 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| || |
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|
| T |
8899585 |
ttgaaatacaaagtttaggtaacataagtattaagtttggcatttaagcagtagggtaagatgcctgcattgcaatgccacagagcccttcagcagcttc |
8899486 |
T |
|
| Q |
127 |
aacacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataa |
226 |
Q |
| |
|
||| || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
8899485 |
aactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattactgacaccataa |
8899386 |
T |
|
| Q |
227 |
cccacggcggtaacacc |
243 |
Q |
| |
|
|| ||||| || ||||| |
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|
| T |
8899385 |
cctacggcagtgacacc |
8899369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 31727696 - 31727542
Alignment:
| Q |
74 |
gcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgtatccttcttcaccccaatcggttc |
173 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||| |||||||| | |||||| ||||| ||||||||| ||||||| |||||||||||||| | |||| |
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|
| T |
31727696 |
gcagttggataagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttc |
31727597 |
T |
|
| Q |
174 |
cccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacc |
228 |
Q |
| |
|
|||| || || || ||||||||||||| ||| |||| | || |||||||||||| |
|
|
| T |
31727596 |
cccatgaattcttcaccaaccaatactcagtctcatcttcaccaacaccataacc |
31727542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 4744959 - 4744877
Alignment:
| Q |
146 |
atgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacc |
228 |
Q |
| |
|
||||| ||||||||||||||| | | |||||||| || |||| ||||||||||||||||||||| | ||| ||||| ||||| |
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|
| T |
4744959 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatcttcacttacaccgtaacc |
4744877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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