View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_31 (Length: 237)
Name: NF8107_high_31
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 16867209 - 16867408
Alignment:
| Q |
24 |
agtttgaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagc |
123 |
Q |
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| T |
16867209 |
agtttgaattacaaagtttagataacataagtattaattttgacatttaagcagtagggtatgatgcttgcattgcaatgccacaaagtccttcagcagc |
16867308 |
T |
|
| Q |
124 |
atcaacacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacacca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867309 |
atcaacacctctttgcatcataatgtatccttcttcaccccattcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacacca |
16867408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 44730828 - 44731013
Alignment:
| Q |
30 |
aattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaac |
129 |
Q |
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||||||||||||||| |||| |||||||||| ||||| | |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
44730828 |
aattacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccac |
44730927 |
T |
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| Q |
130 |
acctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattac |
215 |
Q |
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| T |
44730928 |
tcccctttgcatcctaatgtatccttcttcgccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattac |
44731013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 30881968 - 30881782
Alignment:
| Q |
29 |
gaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaa |
128 |
Q |
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|||||||||||||||| ||||||| | ||||| |||| | |||||||||||| || ||||||| |||||||||||||||||||||||| || ||||| | |
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| T |
30881968 |
gaattacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcga |
30881869 |
T |
|
| Q |
129 |
cacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattac |
215 |
Q |
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| T |
30881868 |
ctcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattac |
30881782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 30719394 - 30719577
Alignment:
| Q |
32 |
ttacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacac |
131 |
Q |
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||||| ||||||| ||||||| | ||||| |||| | |||||||||||| || ||||||| |||||||||||||||||||||||| || ||||| || | |
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| T |
30719394 |
ttacatagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactc |
30719493 |
T |
|
| Q |
132 |
ctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattac |
215 |
Q |
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| ||||||||| ||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||| |
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| T |
30719494 |
ccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattac |
30719577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 30893030 - 30892862
Alignment:
| Q |
50 |
ataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgt |
149 |
Q |
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|||||||| || |||| | || ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| || | ||||||||| |||||| |
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| T |
30893030 |
ataagtatcaagtttgtctttcaagcagtgggataagatgccatcattgcaatgccacaaagtccttgagcagcatctacgctcctttgcatcctaatgt |
30892931 |
T |
|
| Q |
150 |
atccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaa |
218 |
Q |
| |
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||||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||||||||||| |
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| T |
30892930 |
atccttcttcaccccaatcatttccccatgaattcttaaccaaccaatacttggttccatcattactaa |
30892862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 8899585 - 8899389
Alignment:
| Q |
27 |
ttgaattacaaagtttagataacataagtattaattttgacatttaagcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatc |
126 |
Q |
| |
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||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| || |
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| T |
8899585 |
ttgaaatacaaagtttaggtaacataagtattaagtttggcatttaagcagtagggtaagatgcctgcattgcaatgccacagagcccttcagcagcttc |
8899486 |
T |
|
| Q |
127 |
aacacctctttgcatcataatgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatcattactaacacca |
223 |
Q |
| |
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||| || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
8899485 |
aactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattactgacacca |
8899389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 31727696 - 31727570
Alignment:
| Q |
74 |
gcagtaggatatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgtatccttcttcaccccaatcggttc |
173 |
Q |
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||||| ||||| |||| |||||||||||||||||| |||||||| | |||||| ||||| ||||||||| ||||||| |||||||||||||| | |||| |
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| T |
31727696 |
gcagttggataagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttc |
31727597 |
T |
|
| Q |
174 |
cccaagagtttttaaccaaccaatact |
200 |
Q |
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|||| || || || ||||||||||||| |
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| T |
31727596 |
cccatgaattcttcaccaaccaatact |
31727570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 4744959 - 4744895
Alignment:
| Q |
146 |
atgtatccttcttcaccccaatcggttccccaagagtttttaaccaaccaatacttagttccatc |
210 |
Q |
| |
|
||||| ||||||||||||||| | | |||||||| || |||| ||||||||||||||||||||| |
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| T |
4744959 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatc |
4744895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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