View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_high_8 (Length: 429)
Name: NF8107_high_8
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 5021941 - 5022339
Alignment:
| Q |
12 |
aacctgtggtgctgacaccatatagaggtgtttgttattgcttgaagcagtattcaactcagggacctcaaaattatcaagaactattcaaatttcgtca |
111 |
Q |
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| T |
5021941 |
aacctggggtgctgacaccatatagaggtgtctgttattgcttgaagcagtattcaactcagggacctcaaaattatcaagaactattcaaatttcgtca |
5022040 |
T |
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| Q |
112 |
tgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgattacaactggtgacaatgaatcatatttttcaattcgaacc |
211 |
Q |
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| T |
5022041 |
tgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgattacaactggtgacaatgaatcatatttttcaattcgaacc |
5022140 |
T |
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| Q |
212 |
atgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatcgtgaattgctac |
311 |
Q |
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| T |
5022141 |
atgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatcgtgaattgctac |
5022240 |
T |
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| Q |
312 |
atgacaaaagtcgatacatatcaaagaaactgaaacttgaagtggactctgaagaaaaaccgagttcaagtaagaaaattgctttggaaatgtggaatg |
410 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022241 |
atgacaaaagtcgatacatatcaaagaaacggaaacttgaagtggactctgaagaaaaaccgagttcaagtaagaaaattgctttggaaatgtggaatg |
5022339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 5019430 - 5019511
Alignment:
| Q |
218 |
cgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatc |
299 |
Q |
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| T |
5019430 |
cgtataatcattgcttgttgtgttttgcataactttcttatggaagttgacattgacgaacaaatgattgctgaagtagatc |
5019511 |
T |
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