View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_low_1 (Length: 947)

Name: NF8107_low_1
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_low_1
NF8107_low_1
[»] chr1 (7 HSPs)
chr1 (183-931)||(7651907-7652648)
chr1 (16-174)||(7651329-7651499)
chr1 (388-447)||(13054879-13054936)
chr1 (388-444)||(21400024-21400078)
chr1 (392-444)||(33153881-33153931)
chr1 (388-444)||(43611430-43611484)
chr1 (414-451)||(45652113-45652150)
[»] chr7 (12 HSPs)
chr7 (388-448)||(16577857-16577915)
chr7 (388-448)||(16587747-16587805)
chr7 (596-682)||(37923252-37923338)
chr7 (388-454)||(38553824-38553888)
chr7 (413-447)||(35165562-35165596)
chr7 (505-617)||(2401263-2401376)
chr7 (414-451)||(6768701-6768738)
chr7 (388-444)||(7872749-7872803)
chr7 (392-444)||(7994885-7994935)
chr7 (568-633)||(28080632-28080697)
chr7 (391-444)||(31533394-31533447)
chr7 (392-444)||(40187637-40187687)
[»] chr4 (13 HSPs)
chr4 (388-444)||(10564466-10564520)
chr4 (414-454)||(34968000-34968040)
chr4 (388-454)||(21623410-21623474)
chr4 (389-439)||(23160047-23160095)
chr4 (388-451)||(32139345-32139407)
chr4 (388-442)||(43539821-43539873)
chr4 (414-448)||(9783929-9783963)
chr4 (414-451)||(9990296-9990333)
chr4 (512-576)||(18528326-18528391)
chr4 (413-454)||(19124614-19124654)
chr4 (414-447)||(37735819-37735852)
chr4 (572-636)||(41037071-41037136)
chr4 (584-617)||(44249096-44249129)
[»] chr3 (8 HSPs)
chr3 (388-447)||(27185483-27185540)
chr3 (505-636)||(33640183-33640317)
chr3 (388-448)||(35863810-35863868)
chr3 (388-442)||(5117214-5117266)
chr3 (389-446)||(55494696-55494751)
chr3 (392-444)||(2186428-2186478)
chr3 (414-451)||(15507265-15507302)
chr3 (388-444)||(35191818-35191872)
[»] chr6 (8 HSPs)
chr6 (506-557)||(15082037-15082088)
chr6 (567-636)||(6542757-6542826)
chr6 (414-451)||(28592681-28592718)
chr6 (388-451)||(30639420-30639481)
chr6 (388-444)||(34828312-34828367)
chr6 (414-451)||(9333974-9334011)
chr6 (392-448)||(16390439-16390493)
chr6 (388-448)||(17151242-17151300)
[»] chr8 (6 HSPs)
chr8 (411-447)||(13032360-13032396)
chr8 (388-450)||(42208464-42208524)
chr8 (388-448)||(13575295-13575353)
chr8 (414-451)||(27044884-27044921)
chr8 (388-444)||(30623299-30623353)
chr8 (388-444)||(39821890-39821944)
[»] chr5 (8 HSPs)
chr5 (388-443)||(2705518-2705571)
chr5 (388-451)||(11017182-11017243)
chr5 (389-451)||(5195145-5195206)
chr5 (388-444)||(6489013-6489067)
chr5 (388-444)||(26409259-26409313)
chr5 (414-451)||(31708140-31708177)
chr5 (415-452)||(38031443-38031480)
chr5 (388-444)||(39143720-39143774)
[»] chr2 (8 HSPs)
chr2 (388-451)||(24393251-24393312)
chr2 (388-442)||(43826445-43826497)
chr2 (392-444)||(7640668-7640718)
chr2 (388-444)||(24592847-24592901)
chr2 (388-444)||(25274830-25274884)
chr2 (414-451)||(34903547-34903584)
chr2 (505-617)||(36316119-36316232)
chr2 (388-444)||(43117191-43117245)
[»] scaffold0118 (1 HSPs)
scaffold0118 (388-454)||(40004-40068)
[»] scaffold0045 (1 HSPs)
scaffold0045 (452-486)||(41189-41223)


Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 183 - 931
Target Start/End: Original strand, 7651907 - 7652648
Alignment:
Q  183 atttaatgatgttgtaaaactattttagacgttattgcatatcggctaaacttaaaaatcaaatgagaacatcttacctcaatcattaaaaatgtcttat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651907 atttaatgatgttgtaaaactattttagacgttattgcatatcggctaaacttaaaaatcaaatgagaacatcttacctcaatcattaaaaatgtcttat 7652006  T
Q  283 gannnnnnnnnnnnnatggttcggtagtttaatacggagaagtggagaatttgaaatttaaactctaatctctgcatattaatgtaattcaaattttaag 382  Q
    ||             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  7652007 gatttttttt-----atggtccggtagtttaatacggagaagtggagaatttgaaatttaaactctaatctctgcatattaatgtacttaaaatttttag 7652101  T
Q  383 cttagttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatcaactacgatttctaagatggtatcaaagc 482  Q
    ||||||||| |||||||||| ||||||||||  ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7652102 cttagttagttcagttggtatggacaataca--taatatatgtaaggtctgaagttcgaacctcagacaccaactacgatttctaagatggtatcaaagc 7652199  T
Q  483 ctctaccatttatcgagcttttgttatcgggccatccaccatttatgttcatgctccagatgtccagtcatgagcttcaggggggtgttaagagccttac 582  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |||| ||||||||| |||||||||||| |||||    
T  7652200 ctccaccatttatcgagcttttgttatcgggccatccaccgtttatgttcacgctcaagatgtccaatcattagcttcaggagggtgttaagagtcttac 7652299  T
Q  583 gtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcacctcctaaactaatttttgtgaaattgtattagatccaaccacgatttct 682  Q
     ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||  |||||    
T  7652300 atcggataaaagatggtctgacaatgtgtttataagtagggcaatcttcacctcataagctagtttttgtggaattgtattagatccaaccacactttct 7652399  T
Q  683 ctcaaaaattaccaattgagttgtatttacacatgatctcacgatgttttttaacctcatcttcatctacttgtcaaagaatgcaattttcttttgttag 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652400 ctcaaaaattaccaattgagttgtatttacacatgatctcacgatgttttttaacctcatcttcatctacttgtcaaagaatgcaattttcttttgttag 7652499  T
Q  783 aaatttctttaatgtcatatattgaccggggcttatcatcatgtaagctatattgtcttcgatttagtacaacccaattgatttcttctaacatactcaa 882  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652500 aaatttctttaatgtcatatattgaccggggcttatcatcatgtaagctatattgtcttcgatttagtacaacccaattgatttcttctaacatactcaa 7652599  T
Q  883 tgacgttatcttggtgaacatgaggcacatgtgatccttacttaatttt 931  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652600 tgacgttatcttggtgaacatgaggcacatgtgatccttacttaatttt 7652648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 7651329 - 7651499
Alignment:
Q  16 gatgaagacaaaataggtgtcagcaaatagttgattg------------atggaaacatctataatgccacaagctgaagaacatgcatcaatgnnnnnn 103  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||          
T  7651329 gatgaagacaaaataggtgtcagcaaatagttgattgcttgtgtgattgatggaaacatctataatgccacaagctgaagaacatgcatcaatgtttttt 7651428  T
Q  104 ncttcctttttctaaacataaaacttctattcgtagggttgatatacataataagaaactttatgtatgat 174  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651429 tcttcttttttctaaacataaaacttctattcgtagggttgatatacataataagaaactttatgtatgat 7651499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 13054879 - 13054936
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcg 447  Q
    |||||| |||||||||||||||| ||  ||||||||| |||||| |||||||||||||||    
T  13054879 ttagcttagttggtagggacaatgca--taatatatgcaaggtcggaggttcgaacctcg 13054936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 21400078 - 21400024
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||||||||||||||||||||||   ||||||||||| |||||||  ||||||||||    
T  21400078 ttagctcagttggtagggacaat--gcataatatatgcaaggtcttgggttcgaacc 21400024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 33153931 - 33153881
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||    
T  33153931 ctcagttggtagggacaatgca--taatatatgtaaggtccgaggttcaaacc 33153881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 43611430 - 43611484
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| |||||||  |||||||||||||||||| || ||||| ||||    
T  43611430 ttagctcagttggtatggacaat--acataatatatgtaaggtatggggttcaaacc 43611484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 45652150 - 45652113
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  45652150 cataatatatgtaaggtccgaggttcgaacctcagaca 45652113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 16577915 - 16577857
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| ||||||||    
T  16577915 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcgg 16577857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 16587747 - 16587805
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| ||||||||    
T  16587747 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcgg 16587805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 596 - 682
Target Start/End: Complemental strand, 37923338 - 37923252
Alignment:
Q  596 tggtctgacaatgtgtttataaataggg-caatcttcacctcctaaactaatttttgtgaaattgtattagatccaaccacgatttct 682  Q
    |||||||||||||||||||||||||||| ||||| ||| |||  |||||   |||||||||| ||| ||||||| |||||||||||||    
T  37923338 tggtctgacaatgtgtttataaatagggacaatcatcatctcacaaact-ggttttgtgaaactgtgttagatctaaccacgatttct 37923252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 38553824 - 38553888
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 454  Q
    ||||||||||||||| | ||||| ||  ||||||||||||||| || ||||||||||||||||||||    
T  38553824 ttagctcagttggtaagaacaatgca--taatatatgtaaggtttggggttcgaacctcggacatca 38553888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 35165562 - 35165596
Alignment:
Q  413 acataatatatgtaaggtctgaggttcgaacctcg 447  Q
    |||||||||||||||||||||||||||||||||||    
T  35165562 acataatatatgtaaggtctgaggttcgaacctcg 35165596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 617
Target Start/End: Original strand, 2401263 - 2401376
Alignment:
Q  505 gttatcgggccatccaccatttatgttcatgctccagatgtccagtcatgagcttcaggggggtgttaa-gagccttacgtcggataaaaggtggtctga 603  Q
    |||||||| ||| | ||||||||||| || | ||||||| ||||||| || |  | ||||| ||||||| |||  | || |||||||| ||| |||||||    
T  2401263 gttatcggaccaccgaccatttatgtccacgttccagatatccagtcctgggtatgaggggtgtgttaaagagtttcacatcggataagaggcggtctga 2401362  T
Q  604 caatgtgtttataa 617  Q
    ||||||||||||||    
T  2401363 caatgtgtttataa 2401376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 6768738 - 6768701
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6768738 cataatatatgcaaggtctgaggttcgaatctcggaca 6768701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 7872803 - 7872749
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  7872803 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 7872749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 7994935 - 7994885
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||||||||||||||||| |||  |||||||||||||||||| ||||| ||||    
T  7994935 ctcagttggtagggacaaaaca--taatatatgtaaggtctggggttcaaacc 7994885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 633
Target Start/End: Original strand, 28080632 - 28080697
Alignment:
Q  568 tgttaagagccttacgtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcac 633  Q
    ||||||||| || || |||||||| || ||  |||||||||||||||||| ||||||||| |||||    
T  28080632 tgttaagagtctcacatcggataagagatgacctgacaatgtgtttataagtagggcaattttcac 28080697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 31533447 - 31533394
Alignment:
Q  391 gctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||| || |||||||| |||||||||||| ||||| || ||||||||||    
T  31533447 gctcagttgataaggacaatatacataatatatgcaaggtttggggttcgaacc 31533394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 40187687 - 40187637
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||    
T  40187687 ctcagttggtagggacaatgca--taatatatgtaaggtctgcggttcaaacc 40187637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 10564520 - 10564466
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||    
T  10564520 ttagctcagttggtatggacaataca--taatatatgtaaggtctgaggttcaaacc 10564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 34968040 - 34968000
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggacatca 454  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  34968040 cataatatatgtaaggtttgaggttcgaacctcggccatca 34968000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 21623474 - 21623410
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 454  Q
    |||| |||||||||||||||||| ||  ||||||||| |||||||||||||  |||||||| |||||    
T  21623474 ttagttcagttggtagggacaatgca--taatatatgcaaggtctgaggtttaaacctcggccatca 21623410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 439
Target Start/End: Original strand, 23160047 - 23160095
Alignment:
Q  389 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttc 439  Q
    ||||||||||||||||||||||   |||||||||||||||||| |||||||    
T  23160047 tagctcagttggtagggacaat--gcataatatatgtaaggtccgaggttc 23160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 32139345 - 32139407
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    |||||||||||| ||||||||||||| | |||||||| |||||| | |||||||||| ||||||    
T  32139345 ttagctcagttgatagggacaatacata-aatatatgcaaggtccggggttcgaaccccggaca 32139407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 43539821 - 43539873
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 442  Q
    |||| ||||||||||||||||||  |||||||||||||| || ||||||||||||    
T  43539821 ttagttcagttggtagggacaat--acataatatatgtaggggctgaggttcgaa 43539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 448
Target Start/End: Original strand, 9783929 - 9783963
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    |||||||||||||||||||||||||| ||||||||    
T  9783929 cataatatatgtaaggtctgaggttcaaacctcgg 9783963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 9990296 - 9990333
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  9990296 cataatatatgcaagatctgaggttcgaacctcggaca 9990333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 576
Target Start/End: Complemental strand, 18528391 - 18528326
Alignment:
Q  512 ggccatccaccatttatgttcatgctccagatgtccagtcatgagcttca-ggggggtgttaagag 576  Q
    ||||| |||||||||||  ||||||| || |||||||||||||||| | | |||||||||||||||    
T  18528391 ggccacccaccatttatagtcatgcttcaaatgtccagtcatgagcgtgagggggggtgttaagag 18528326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 19124654 - 19124614
Alignment:
Q  413 acataatatatgtaaggtctgaggttcgaacctcggacatca 454  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  19124654 acataatatatgcaaggtctgaggttcgaacc-cggacatca 19124614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 37735819 - 37735852
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcg 447  Q
    |||||||||||||||||||||||||| |||||||    
T  37735819 cataatatatgtaaggtctgaggttcaaacctcg 37735852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 636
Target Start/End: Complemental strand, 41037136 - 41037071
Alignment:
Q  572 aagagccttacgtcggataaaaggtggtctgacaatgtgtttataaataggg-caatcttcacctc 636  Q
    ||||| ||||| ||||||||||| | |||||||| ||||||||||||  ||| |||||||||||||    
T  41037136 aagagtcttacatcggataaaagatagtctgacagtgtgtttataaacggggacaatcttcacctc 41037071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 617
Target Start/End: Original strand, 44249096 - 44249129
Alignment:
Q  584 tcggataaaaggtggtctgacaatgtgtttataa 617  Q
    ||||||||||| ||||||||||||||||||||||    
T  44249096 tcggataaaagatggtctgacaatgtgtttataa 44249129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 27185483 - 27185540
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcg 447  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| |||||||    
T  27185483 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcg 27185540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 636
Target Start/End: Original strand, 33640183 - 33640317
Alignment:
Q  505 gttatcgggccatccaccatttatgttcatgctccagatgtccagtcatgagcttcaggggggtg---ttaagagccttacgtcggataaaaggtggtct 601  Q
    ||||| || ||| ||||||||||||| |||||||||||||||||||| |  || | || ||||||   | ||||| |  ||||||||||| | | |||||    
T  33640183 gttattggaccacccaccatttatgtccatgctccagatgtccagtcctaggcgtgagaggggtgtgttaaagagtcacacgtcggataaga-gaggtct 33640281  T
Q  602 gacaatgtgtttataaataggg-caatcttcacctc 636  Q
    |||||||||||||||| | ||| |||||||||||||    
T  33640282 gacaatgtgtttataagtggggacaatcttcacctc 33640317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 35863868 - 35863810
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    ||||||||||||||| ||||||||||  ||||||||| |||||||| ||||| ||||||||    
T  35863868 ttagctcagttggtaaggacaataca--taatatatgcaaggtctggggttcaaacctcgg 35863810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 5117214 - 5117266
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 442  Q
    |||||||||||| || ||||||||||  ||||||||||||||| |||||||||||    
T  5117214 ttagctcagttgataaggacaataca--taatatatgtaaggtttgaggttcgaa 5117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 55494696 - 55494751
Alignment:
Q  389 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctc 446  Q
    ||||||| |||||||||||||| ||  |||||||||||||| ||| ||||||||||||    
T  55494696 tagctcaattggtagggacaatgca--taatatatgtaaggactggggttcgaacctc 55494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 2186478 - 2186428
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||| ||||||||||  |||||||||||||||||| ||||| ||||    
T  2186478 ctcagttggtatggacaataca--taatatatgtaaggtctggggttcaaacc 2186428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 15507302 - 15507265
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  15507302 cataatatatgtaaggtctgaggttcgaatcccggaca 15507265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 35191872 - 35191818
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  35191872 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 35191818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 15082088 - 15082037
Alignment:
Q  506 ttatcgggccatccaccatttatgttcatgctccagatgtccagtcatgagc 557  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||| |||||    
T  15082088 ttatcgggccacccaccatttatgttcacgcttcagatgtccagtcttgagc 15082037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 636
Target Start/End: Complemental strand, 6542826 - 6542757
Alignment:
Q  567 gtgttaagagccttacgtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcacctc 636  Q
    |||||||||| || || |||||||  || |||||||||||| ||||||||||| |||||||| |||||||    
T  6542826 gtgttaagagtctcacatcggataggagatggtctgacaatctgtttataaatggggcaatcatcacctc 6542757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 28592718 - 28592681
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    |||||||||||||||||||| |||||||||||||||||    
T  28592718 cataatatatgtaaggtctggggttcgaacctcggaca 28592681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 30639481 - 30639420
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||||||||| | ||| ||  ||||||||| ||||||||||||||||| ||||||||    
T  30639481 ttagctcagttggtaggaataatgca--taatatatgcaaggtctgaggttcgaatctcggaca 30639420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 34828312 - 34828367
Alignment:
Q  388 ttagctcagttggtagggacaatacacataata-tatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||    
T  34828312 ttagctcagttggtatggacaatgca--taataatatgtaaggtctgaggttcgaacc 34828367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 9334011 - 9333974
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9334011 cataatatatgtaaggtttggggttcgaacctcggaca 9333974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 16390439 - 16390493
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    ||||||||||||||||||| ||  |||||||||||||||| | ||||| ||||||||    
T  16390439 ctcagttggtagggacaatgca--taatatatgtaaggtccggggttcaaacctcgg 16390493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 17151242 - 17151300
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    |||||| ||||||||| |||||||||  ||||||||| |||||||| ||||| ||||||||    
T  17151242 ttagctaagttggtagtgacaataca--taatatatgcaaggtctggggttcaaacctcgg 17151300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 13032396 - 13032360
Alignment:
Q  411 acacataatatatgtaaggtctgaggttcgaacctcg 447  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13032396 acacataatatatgcaaggtctgaggttcgaacctcg 13032360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 42208524 - 42208464
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggac 450  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||| ||||||| ||||||||||    
T  42208524 ttagctcagttggtaaggacaatgca--taatatatgcaaggtccgaggttcaaacctcggac 42208464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 13575295 - 13575353
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 448  Q
    |||||||||||||||||||||||   ||||| ||||| ||| || ||||||||||||||||    
T  13575295 ttagctcagttggtagggacaat--gcataacatatgcaagttccgaggttcgaacctcgg 13575353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 27044921 - 27044884
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  27044921 cataatatatgtaaggtctgaggttcaaaccccggaca 27044884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 30623299 - 30623353
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  30623299 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 30623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 39821890 - 39821944
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  39821890 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 39821944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 2705571 - 2705518
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaac 443  Q
    |||||||||||| || | ||||||||  ||||||||||||||||||||||||||||    
T  2705571 ttagctcagttgataagaacaataca--taatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 11017182 - 11017243
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||||||||||| ||| ||  ||||||||| ||||||||||||||||| | ||||||    
T  11017182 ttagctcagttggtagggataatgca--taatatatgcaaggtctgaggttcgaatcccggaca 11017243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 5195206 - 5195145
Alignment:
Q  389 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||||||| ||||| || ||||||||||||| ||  ||||||||||||||| ||||    
T  5195206 tagctcagttggtagagacaa-acgcataatatatgtaggggttgaggttcgaacctcagaca 5195145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 6489013 - 6489067
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  6489013 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 6489067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 26409259 - 26409313
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  |||||||||||||||| | ||||||||||    
T  26409259 ttagctcagttggtatggacaatgca--taatatatgtaaggtccggggttcgaacc 26409313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 31708177 - 31708140
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  31708177 cataatatatgcaaggtctggggttcgaacctcggaca 31708140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 38031443 - 38031480
Alignment:
Q  415 ataatatatgtaaggtctgaggttcgaacctcggacat 452  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  38031443 ataatatatgtaaggtctgaggttcgaatttcggacat 38031480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 39143720 - 39143774
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||| | ||  ||||||||||||||| |||||||||||||    
T  39143720 ttagctcagttggtatggacattgca--taatatatgtaaggtttgaggttcgaacc 39143774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 24393251 - 24393312
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    |||||||||||| || ||||||| ||  ||||||||| ||||||||||||||||||| ||||||    
T  24393251 ttagctcagttgttaaggacaatgca--taatatatgcaaggtctgaggttcgaaccccggaca 24393312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 43826497 - 43826445
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 442  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| ||| |||||||    
T  43826497 ttagctcagttggtaaggacaataca--taatatatgtaaggtatgatgttcgaa 43826445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7640668 - 7640718
Alignment:
Q  392 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||| |||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  7640668 ctcaattggtaaggacaataca--taatatatgtaaggcctgaggttcgaacc 7640718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 24592901 - 24592847
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  24592901 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 24592847  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 25274884 - 25274830
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| | ||||| ||  |||||||||||||||||| ||||||||||    
T  25274884 ttagctcagttggtaagaacaatgca--taatatatgtaaggtctggggttcgaacc 25274830  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 34903547 - 34903584
Alignment:
Q  414 cataatatatgtaaggtctgaggttcgaacctcggaca 451  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  34903547 cataatatatgcaaggtctgaggttcgaaccccggaca 34903584  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 617
Target Start/End: Complemental strand, 36316232 - 36316119
Alignment:
Q  505 gttatcgggccatccaccatttatgttcatgctccagatgtccagtcatgagcttcaggg-gggtgttaagagccttacgtcggataaaaggtggtctga 603  Q
    |||||||||||| |||||||||||||||| ||| ||||||| || || ||||| | |||| | |||||||||| |  || || | || ||| ||| ||||    
T  36316232 gttatcgggccacccaccatttatgttcacgcttcagatgtgcaatcctgagcgtgagggtgtgtgttaagagtcccacatcagttagaagttggcctga 36316133  T
Q  604 caatgtgtttataa 617  Q
    |||| |||||||||    
T  36316132 caatttgtttataa 36316119  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 43117245 - 43117191
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 444  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||||||||| ||||    
T  43117245 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctgaggttcaaacc 43117191  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 40004 - 40068
Alignment:
Q  388 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 454  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||  ||||||| ||||||||||||||    
T  40004 ttagctcagttggtatggacaatgca--taatatatgcaaggttagaggttcaaacctcggacatca 40068  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 486
Target Start/End: Complemental strand, 41223 - 41189
Alignment:
Q  452 tcaactacgatttctaagatggtatcaaagcctct 486  Q
    ||||||||||||||||||||||||||| |||||||    
T  41223 tcaactacgatttctaagatggtatcagagcctct 41189  T

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