View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_low_11 (Length: 434)

Name: NF8107_low_11
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_low_11
NF8107_low_11
[»] chr6 (2 HSPs)
chr6 (1-415)||(12629911-12630319)
chr6 (180-225)||(34625716-34625761)
[»] chr1 (2 HSPs)
chr1 (160-207)||(43328467-43328513)
chr1 (160-195)||(303693-303728)
[»] scaffold0001 (1 HSPs)
scaffold0001 (161-225)||(398619-398683)
[»] chr4 (2 HSPs)
chr4 (160-196)||(9018882-9018918)
chr4 (160-200)||(20119952-20119991)
[»] chr3 (2 HSPs)
chr3 (165-198)||(35724224-35724257)
chr3 (161-225)||(35335583-35335647)
[»] chr5 (1 HSPs)
chr5 (132-196)||(38685283-38685347)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 12629911 - 12630319
Alignment:
Q  1 ttgattgtggtgtttccattggaactgtatgatccccaatccctactaaaaaatttcttgcaattttgtacttgtgtagcactgacacttcatactgaag 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12629911 ttgattgtggtgtttccattggaactgtatgatccctaatcccttctaaaaaatttcttgcaattttgtacttgtgtagtactgacacttcatactgaag 12630010  T
Q  101 gcatgtatgtctggtgttcaacgtgactcagtgtccgatacccgcatgacacagacaagtgtggttacattaaattactttcattttctcaaattattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||   |||||    
T  12630011 gcatgtatgtctggtgttcaacgtgactcagtgtccgatacccgcatgacaaagacaagtgtggttacattaaataactttcattttctcaa---attat 12630107  T
Q  201 atgtgtcgatgtatcagtttcatgtccactctttatgtcagtgcttaatagattttcttctacgacgactattgttactgttcttgttgttatgtgtaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  12630108 atgtgtcgatgtatcagtttcatgtccactctttatgtcagtgcttaatagattttcttctacgacgactattgttactgttc---ttgttatgtgtaga 12630204  T
Q  301 aggattgatattccatactatccggatatttccggtgttaattgaacattttgcagatttttgggatttatatgatgaaagataaccatgaaccagtcat 400  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12630205 aggattgatattccatactaaccagatatttccggtgtcaattgaacattttgcagatttttgggatttatatgatgaaagataaccatgaaccagtcat 12630304  T
Q  401 agaagatgctctgca 415  Q
    |||||||||||||||    
T  12630305 agaagatgctctgca 12630319  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 34625761 - 34625716
Alignment:
Q  180 ttcattttctcaaattattatatgtgtcgatgtatcagtttcatgt 225  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||    
T  34625761 ttcattttctcaaattattatcggtgtcgatgtatcaatttcatgt 34625716  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 43328513 - 43328467
Alignment:
Q  160 tgtggttacattaaattactttcattttctcaaattattatatgtgtc 207  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  43328513 tgtggttacattaaatta-tttcattttctcaaattattataagtgtc 43328467  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 303728 - 303693
Alignment:
Q  160 tgtggttacattaaattactttcattttctcaaatt 195  Q
    |||||||||||| |||||||||||||||||||||||    
T  303728 tgtggttacattcaattactttcattttctcaaatt 303693  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 398683 - 398619
Alignment:
Q  161 gtggttacattaaattactttcattttctcaaattattatatgtgtcgatgtatcagtttcatgt 225  Q
    ||||||||||| ||||||||  ||||||| |||||||||| ||||||||||  ||||| ||||||    
T  398683 gtggttacattcaattacttcaattttcttaaattattatttgtgtcgatgcgtcagtgtcatgt 398619  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 9018882 - 9018918
Alignment:
Q  160 tgtggttacattaaattactttcattttctcaaatta 196  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9018882 tgtggttacattcaattactttcattttctcaaatta 9018918  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 20119991 - 20119952
Alignment:
Q  160 tgtggttacattaaattactttcattttctcaaattattat 200  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  20119991 tgtgattacattaaatta-tttcattttctcaaattattat 20119952  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 35724257 - 35724224
Alignment:
Q  165 ttacattaaattactttcattttctcaaattatt 198  Q
    ||||||| ||||||||||||||||||||||||||    
T  35724257 ttacattcaattactttcattttctcaaattatt 35724224  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 35335647 - 35335583
Alignment:
Q  161 gtggttacattaaattactttcattttctcaaattattatatgtgtcgatgtatcagtttcatgt 225  Q
    |||||| |||| ||| |||||||||||||||||||||||   ||||| |||| ||||| ||||||    
T  35335647 gtggttgcatttaatcactttcattttctcaaattattactagtgtctatgtgtcagtgtcatgt 35335583  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 38685283 - 38685347
Alignment:
Q  132 tgtccgatacccgcatgacacagacaagtgtggttacattaaattactttcattttctcaaatta 196  Q
    ||||| |||||  |||||||| ||||  |||||||||||| |||||||| |||||||||| ||||    
T  38685283 tgtccaataccgtcatgacactgacacatgtggttacattcaattacttccattttctcatatta 38685347  T

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