View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_13 (Length: 418)
Name: NF8107_low_13
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 42903856 - 42903466
Alignment:
| Q |
1 |
cttggtaataacttccaaatgaaataaattcatacgcttaattccatatatgaaagaagatagaagcaagttaaagacgagaaaaatattgaggaaaaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42903856 |
cttggtaataacttccaaatgaaataaattcatacgcttaattccatatatgaaaga--------------------cgagaaaaatattgaggaaaaaa |
42903777 |
T |
|
| Q |
101 |
gtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903776 |
gtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatata |
42903677 |
T |
|
| Q |
200 |
gtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtggcagcaatgcctctaa |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903676 |
gtttgtttgttgagtgacataaaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtggcagcaatgcctctaa |
42903577 |
T |
|
| Q |
300 |
gggcttcaaagggaccaccacaattgcttatgtctgctgcttactcccttaatatttgggatttgcagcatttcatggtcatcatcaaaccttcctcacc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903576 |
gggcttcaaagggaccaccacaattgcttatgtctgctgcttactcccttaatatttgggatttgcagcatttcatggtcatcatcaaaccttcctcacc |
42903477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 42908859 - 42908538
Alignment:
| Q |
1 |
cttggtaataacttccaaatgaaataaattcatacgcttaattccatatatgaaagaagatagaagcaagttaaagacgagaaaaatattgaggaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42908859 |
cttggtaataacttccaactgaaataaattcatacgcttaattctatatatgaaagaagatagaagcaagttaaagacgagaaaaatattgaggaaaaaa |
42908760 |
T |
|
| Q |
101 |
gtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42908759 |
gtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatata |
42908660 |
T |
|
| Q |
200 |
gtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggt-----aagaggcagagaggaagtgtatgtggcagcaatgcc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42908659 |
gtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaagataagaggcagagaggaagtgtatgtggcagcaatgcc |
42908560 |
T |
|
| Q |
295 |
tctaagggcttcaaagggacca |
316 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
42908559 |
tctaagggcttcaaagggacca |
42908538 |
T |
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