View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_20 (Length: 352)
Name: NF8107_low_20
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 16992387 - 16992716
Alignment:
| Q |
15 |
ttttttactcttcacctttcttaccaattcctccaccacattgaaatctttcctataactctctttctcctcctcg---------------gcatcatca |
99 |
Q |
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| T |
16992387 |
tttttgactcttcacctttcttaccaactcctccaccacattgaaatctttcctataaccctctttctcctcctcctcttcctcgtcctcagcatcatca |
16992486 |
T |
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| Q |
100 |
tcatcattaacataagaggagcttgaagaacagtcatcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcat |
199 |
Q |
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| T |
16992487 |
tcatcattaacataagaggagcttgaagaacagtcatcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcat |
16992586 |
T |
|
| Q |
200 |
ttgcttcactctcatccgaatcatcctcctcactctcttcagaatcatccaaatcaattataaccttttcaccttgatcagaaaacctaccaattccacc |
299 |
Q |
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| T |
16992587 |
ttgcttcactcttatccgaatcatcctccttactctcttcagaatcatccaaatcaattataaccttttcaccttgatcagaaaacctaccaattccccc |
16992686 |
T |
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| Q |
300 |
actttcatcacttttaacaacatcatctgc |
329 |
Q |
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| T |
16992687 |
actttcatcacttttaacaacatcatctgc |
16992716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 10601747 - 10601660
Alignment:
| Q |
135 |
atcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcatttgcttcactctcatccgaatca |
222 |
Q |
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| T |
10601747 |
atcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca |
10601660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 17008126 - 17008185
Alignment:
| Q |
139 |
tcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatca |
198 |
Q |
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| T |
17008126 |
tcatcattgtcagaaatctcattcagctcctcaactttaaaatcttcatcactagaatca |
17008185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 81 - 314
Target Start/End: Complemental strand, 35262832 - 35262596
Alignment:
| Q |
81 |
ctcctcctcggcatcatcatcatcattaacataagaggagcttgaagaacagtcatcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaa |
180 |
Q |
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| T |
35262832 |
ctcctcctcctcgtcatcatcatcatcaacataagaggagctagaagaactgtcatcatcatgattgtctgaaatttcattcagttcatcaactgcaaaa |
35262733 |
T |
|
| Q |
181 |
tcttcatcactagaatcatttgcttcactctcatccgaatcatcct---cctcactctcttcagaatcatccaaatcaattataaccttttcaccttgat |
277 |
Q |
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| T |
35262732 |
tcttcatcactagagtcattttcttcactctcatcagaatcatcctcctcctcactctcttcagaatcatccaaatcaattataaccttttcacctttat |
35262633 |
T |
|
| Q |
278 |
cagaaaacctaccaattccaccactttcatcactttt |
314 |
Q |
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| T |
35262632 |
cagaaaacctaccaattcccccactttcatcactttt |
35262596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 35262928 - 35262863
Alignment:
| Q |
15 |
ttttttactcttcacctttcttaccaattcctccaccacattgaaatctttcctataactctcttt |
80 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||| ||||| || |||| |||||| |
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| T |
35262928 |
tttttgactcttcacctttcttactaattcctccaccacattgaagtcttttctgtaaccctcttt |
35262863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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