View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_21 (Length: 350)
Name: NF8107_low_21
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 31390656 - 31390993
Alignment:
| Q |
1 |
attaatttttaggctattcatttctcataatatatgcaactaacaggtggatttagtgttgcatttgaccctcttgatggttcaagcatagtagacacaa |
100 |
Q |
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| T |
31390656 |
attaatttttaggctatgcatttctgataatatatgcaactaacaggtggatttagtgttgcatttgaccctcttgatggttcaagcatagtagacacaa |
31390755 |
T |
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| Q |
101 |
atttcacagtaggcaccatctttggtgtatggcctggtgataagttgattggagtaacaggaagagatcaagttgctgcagctatgggagttttaggtcc |
200 |
Q |
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| T |
31390756 |
atttcacagtaggcaccatctttggtgtatggcctggtgataagttgattggagtaacaggaagagatcaagttgctgcagctatgggagttttaggtcc |
31390855 |
T |
|
| Q |
201 |
tagaaccacttatgtacttgcacttaaggacttccccggcactcatgaatttctacttcttgatgaaggtaacattgatgtcataagatttatgagattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31390856 |
tagaaccacttatgtacttgcacttaaggacttccccggcactcatgaatttctacttcttgatgaaggtaacattgatgtcataagatttatgagattc |
31390955 |
T |
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| Q |
301 |
taataaggtagctatttcactttatgatatgttcattt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31390956 |
taataaggtagctatttcactttatgatatgttcattt |
31390993 |
T |
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