View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_23 (Length: 343)
Name: NF8107_low_23
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 16992062 - 16992363
Alignment:
| Q |
18 |
caacattcacacattcatcagagagatttttcaatttcccttctacactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacc |
117 |
Q |
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| T |
16992062 |
caacattcacacattcatcagagagatttttcactttcccttccacactctttcgtttcagtgtctctggtactccattcagcttagaagaagaactacc |
16992161 |
T |
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| Q |
118 |
cttcttctcaatggtacaggaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcattctctacctcctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16992162 |
cttcttctcaatggtacaggaggaaacactagcatggtcggcttgctccaactcatcaatatttgtggaagatggattgctctcattctctacctcctca |
16992261 |
T |
|
| Q |
218 |
catttcctctcagaaattccacnnnnnnnatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcct |
317 |
Q |
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| T |
16992262 |
catttcctctcagaaattctactttttttatccttcccctctctcaccatctcctcatcatcattatcagaagatgaactattctcaacatttacttcct |
16992361 |
T |
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| Q |
318 |
ca |
319 |
Q |
| |
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|| |
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| T |
16992362 |
ca |
16992363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 16968420 - 16968637
Alignment:
| Q |
22 |
attcacacattcatcagagagatttttcaatttcccttctacactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacccttc |
121 |
Q |
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| T |
16968420 |
attcacactttcatcagagagatttttcgctttcccttctacactctttggtttcagtgtctctgatactccattcagcttagaagaagaactacccttc |
16968519 |
T |
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| Q |
122 |
ttctcaatggtacaggaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcattctctacctcctcacatt |
221 |
Q |
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| T |
16968520 |
ttctcaatggtacaggaggaaacactagcatgatcttcatgctccaactcatcaatatttgtggaagatggactattctcaacattcacctcttcatcat |
16968619 |
T |
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| Q |
222 |
tcctctcagaaattccac |
239 |
Q |
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| T |
16968620 |
tcctctcagaaattccac |
16968637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 17007925 - 17007992
Alignment:
| Q |
137 |
gaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcatt |
204 |
Q |
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| T |
17007925 |
gaggaaacactagcatgatctgcatgttccaactcatcagtacttgtggaagatggactattctcatt |
17007992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 62 - 309
Target Start/End: Complemental strand, 35263308 - 35263064
Alignment:
| Q |
62 |
acactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacccttcttctcaatggtacaggaggaaacactagcatgatctgctt |
161 |
Q |
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|||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
35263308 |
acactcattggtttcagtgtctctgatactccattcagtttagaagaagaactacccttcttctcaatgatacaggaggaaacactagcatgatctgcat |
35263209 |
T |
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| Q |
162 |
gctccaactcatcaatatttgtggaagatggattactctcattctctacctcctcacatttcctctcagaaattccacnnnnnnnatccttcccctctct |
261 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| | ||||||||| | |||| ||||||| |
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| T |
35263208 |
gctccaactcatcaatatttgtggaagatggaacattctcattctctaccttctcgtatttcctcttaaaaattccactttttttacgcttcacctctct |
35263109 |
T |
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| Q |
262 |
caccatcacctcatcatcaatatcataagatgaactatgctcaacatt |
309 |
Q |
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|||||| || |||||| |||||||||||| ||||| ||||||||| |
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| T |
35263108 |
caccat---ttcttcatcattatcataagatggactattctcaacatt |
35263064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 35263050 - 35262947
Alignment:
| Q |
221 |
ttcctctcagaaattccacnnnnnnnatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcctcaa |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||| || |||||| |
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| T |
35263050 |
ttcctctcagaaattccactctttttatccttcccctctctcaccatctcctcatcatcattatcagaagatgaacaattctcaacatttacttcctcat |
35262951 |
T |
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| Q |
321 |
catt |
324 |
Q |
| |
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|||| |
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| T |
35262950 |
catt |
35262947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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