View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8107_low_28 (Length: 283)

Name: NF8107_low_28
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8107_low_28
NF8107_low_28
[»] chr2 (2 HSPs)
chr2 (17-272)||(41480993-41481248)
chr2 (27-114)||(41645481-41645568)
[»] chr1 (2 HSPs)
chr1 (18-111)||(26628714-26628806)
chr1 (17-109)||(29982676-29982768)
[»] chr8 (1 HSPs)
chr8 (29-114)||(10879017-10879102)
[»] chr4 (2 HSPs)
chr4 (22-114)||(12103483-12103575)
chr4 (63-114)||(3788742-3788793)
[»] chr5 (1 HSPs)
chr5 (27-114)||(36948646-36948733)
[»] chr6 (2 HSPs)
chr6 (27-119)||(11749708-11749800)
chr6 (34-102)||(1418440-1418506)
[»] chr7 (1 HSPs)
chr7 (26-102)||(19796098-19796173)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 41481248 - 41480993
Alignment:
Q  17 acaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaactaatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  41481248 acaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactctactaaacattattatggattaataagaaactaatagt 41481149  T
Q  117 tttagggtcataaattacagtcgtaggcactcccataaaatacttaactaaaaatttagcatcaaatacattaaaacaaaatcttgaagtcataagtcaa 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41481148 tttagggtcataaattacagtcgtaggcactctcataaaatacttaactaaaaaattagcatcaaatacattaaaacaaaatcttgaagtcataagtcaa 41481049  T
Q  217 ctttgtcttgatatgtttcttcatgaaattgtgatgtctaaagtccaccaattctt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41481048 ctttgtcttgatatgtttcttcatgaaattgtgatgtctaaagtccaccaattctt 41480993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 41645481 - 41645568
Alignment:
Q  27 tgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaactaata 114  Q
    ||||||||||||||||||||||||||||   |||||||| |||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  41645481 tgtaactaactaacaaacttatccaaattgtaaagctaaacacacttaactctactaaacatggttatggattaataacaaactaata 41645568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26628714 - 26628806
Alignment:
Q  18 caagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaacta 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||| |||||||||||||||||||||||||| ||||||    
T  26628714 caagtcttatgtaactaactaacaaacttatccaaatgt-aaagctaaacaaacttaactctactaaacatgattatggattaataacaaacta 26628806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 29982676 - 29982768
Alignment:
Q  17 acaagtctt-atgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaac 109  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||    
T  29982676 acaagtcttcatgtagctaactaacaaacttatccaaatgtaaa-gctaatcacaactaactctactaaacttgattatggatcaataacaaac 29982768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 10879017 - 10879102
Alignment:
Q  29 taactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaac-atgattatggattaataagaaactaata 114  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||||||||| |||||||||    
T  10879017 taactaactaacaaacttatccaaatgt-aaagctaatcacaactaactctgctaaacaatgattatggattaataacaaactaata 10879102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 12103483 - 12103575
Alignment:
Q  22 tcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgatta-tggattaataagaaactaata 114  Q
    |||||||||||||||||||  |||||||||| ||| |||| ||| || |||||||| ||||||||||||||| ||||||||||| |||||||||    
T  12103483 tcttatgtaactaactaacggacttatccaattgt-aaagttaaacaaaattaactctactaaacatgattattggattaataacaaactaata 12103575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 3788742 - 3788793
Alignment:
Q  63 taatcacaattaactttactaaacatgattatggattaataagaaactaata 114  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  3788742 taatcacaactaactctactaaacatgattatggattaataacaaactaata 3788793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 36948733 - 36948646
Alignment:
Q  27 tgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaactaata 114  Q
    |||||||||||||||||||||||||||||  |||||||| || | |||||| ||  |||||| ||||||||||||| | |||||||||    
T  36948733 tgtaactaactaacaaacttatccaaatggtaaagctaaacaaacttaactctaggaaacataattatggattaatcacaaactaata 36948646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 11749708 - 11749800
Alignment:
Q  27 tgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactt-tactaaacatgattatggattaataagaaactaatagtttt 119  Q
    |||||| ||||||||||||||||||||  | |||| ||| |||||||||||| | |||| ||||||||||||||||| | ||||||||| ||||    
T  11749708 tgtaacaaactaacaaacttatccaaa-attaaagataaacacaattaacttcttctaagcatgattatggattaatgaaaaactaataatttt 11749800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 1418506 - 1418440
Alignment:
Q  34 aactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaat 102  Q
    |||||||||||||| ||| | |||||| ||||||| || ||||| |||||||| |||||||||||||||    
T  1418506 aactaacaaactta-ccacaagtaaaa-ctaatcaaaactaactctactaaacttgattatggattaat 1418440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 19796098 - 19796173
Alignment:
Q  26 atgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaat 102  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| || ||||| ||||| || |||||||||||||||    
T  19796098 atgtaactaactaccaaacttaaccacaagtaaa-gctaatcaaaactaactctactagacttgattatggattaat 19796173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University