View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8107_low_29 (Length: 279)
Name: NF8107_low_29
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 31225673 - 31225417
Alignment:
| Q |
2 |
ggctccctaggcctagccaaaacagaaaagnnnnnnnnccaacacaacaggccttgctaatgcaacacagcagctgcacaggaaaaaacaacaagtgttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31225673 |
ggctccctaggcctagccaaaacagaaaagaaaaaaaaccaacacaacaggccttgctaatgcaacacagcagctgcacaggaaaaaacagcaagtgttg |
31225574 |
T |
|
| Q |
102 |
tttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccagaaaaactgcagaacaccgcatcacccaaca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31225573 |
tttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccaaaaaaactgcagaacaccgcatcacccaaca |
31225474 |
T |
|
| Q |
202 |
cataacagcaccggatcagcttaagccattcgcaaaagacactcccttgggttccaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31225473 |
cataacagcaccggatcagcttaagccattcgcaaaagacactcccttgggttccaa |
31225417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 41310269 - 41310408
Alignment:
| Q |
85 |
aaaaacaacaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccagaaaaactgcagaa |
184 |
Q |
| |
|
||||||| || ||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||| || || | ||||||||| | |
|
|
| T |
41310269 |
aaaaacagcaggtgctgtttgaacccgcaaaggagcccccaaaaactcagcagagaacagcaa-aactgacagaataccggcagcaaagaaactgcagta |
41310367 |
T |
|
| Q |
185 |
caccgcatcacccaacacataacagcaccggatcagcttaa |
225 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
41310368 |
caccgcagcacccaacacaggacagcaccggagcaacttaa |
41310408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University