View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_3 (Length: 643)
Name: NF8107_low_3
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 23 - 635
Target Start/End: Complemental strand, 33311273 - 33310666
Alignment:
| Q |
23 |
agggcgactctgaaagttgtgtcgtcaaggactccgttgtccacaccgagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaag |
122 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33311273 |
agggcgactctcaaagttgtgtcgtcaaggactccgttgtccacaccgagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaag |
33311174 |
T |
|
| Q |
123 |
ctatgttcttaaagacattctaaaagagtaactatcatcttaactctactatttcaatataataccttaattattttgtaatgtaatgctttaagaatac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
33311173 |
ctatgttcttaaagacattctaaaagagtaactatcatcttaactctactatttcaatataataccttaagtattttgtaatgtaatgcgttaagaatac |
33311074 |
T |
|
| Q |
223 |
ttgttagcataatatcttatacaatacactaaggcacaagttgnnnnnnnnnnnnaacgnnnnnnnctatgaacatcttacttatcatgtgttaaatttt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
33311073 |
ttgttagcataatatcttatacaatacactaaggcacaagttgccccccgcccccaacgaaaaaaactatgaacatcttacttatcatgtgttaaatttt |
33310974 |
T |
|
| Q |
323 |
ggcgtcattcacttttcttttcttctagtttcatcctttattattaaatggttttggcagatcattttggtctgaagcttcaaatgttgtggtcgttgaa |
422 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310973 |
ggcgtcattcacttttcttttcttcttgtttcatcctttattattaaatggttttggcagatcattttggtctgaagcttcaaatgttgtggtcgttgaa |
33310874 |
T |
|
| Q |
423 |
gctgatgcttttaaggagagtgatgtcatatataaagctcttaactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctatt |
522 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310873 |
gctgatgcttttaaggagagtgatgtgatatataaagctcttaactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctatt |
33310774 |
T |
|
| Q |
523 |
ttgtgtgaaactttaaaattaccattttcactatattcccttccctaattagtttgtcatcaaaatctaaacaggtgcatcagtcttccactgatgctgc |
622 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310773 |
ttgtgtgaaactttaaaattaccattttcactatatt-----ccctaattagtttgtcatcaaaatctaaacaggtgcatcagtcttccactgatgctgc |
33310679 |
T |
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| Q |
623 |
atcatctctgcta |
635 |
Q |
| |
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||||||||||||| |
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| T |
33310678 |
atcatctctgcta |
33310666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 521
Target Start/End: Complemental strand, 33251033 - 33250879
Alignment:
| Q |
370 |
atggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctcttaa |
466 |
Q |
| |
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|||| ||||||||||||||||||| | ||| |||||| | ||||| ||||| || |||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
33251033 |
atggctttggcagatcattttggttgggagcagcttcaaaggcagtggttgttgaggcagatgcttttaaggagaatgatgttatatataaagcccttaa |
33250934 |
T |
|
| Q |
467 |
ctctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctat |
521 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||||||||||||| ||| |||| |
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| T |
33250933 |
ctcaaggggtcaccatgatgacatgcttcaaactgctgaattggtaagctgctat |
33250879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 521
Target Start/End: Complemental strand, 33271205 - 33271051
Alignment:
| Q |
370 |
atggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctcttaa |
466 |
Q |
| |
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|||| ||||||||||||||||||| | ||| |||||| | ||||| ||||| || |||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
33271205 |
atggctttggcagatcattttggttgggagcagcttcaaaggcagtggttgttgaggcagatgcttttaaggagaatgatgttatatataaagcccttaa |
33271106 |
T |
|
| Q |
467 |
ctctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctat |
521 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||||||||||||| ||| |||| |
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| T |
33271105 |
ctcaaggggtcaccatgatgacatgcttcaaactgctgaattggtaagctgctat |
33271051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 368 - 518
Target Start/End: Complemental strand, 33302939 - 33302786
Alignment:
| Q |
368 |
aaatggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctctt |
464 |
Q |
| |
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|||||| |||||||||||||||||||| | ||| |||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||| |
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| T |
33302939 |
aaatggctttggcagatcattttggtcaggagcagattcaaaacctgtggttgttgaggcagatgcttttaaggagagtgatgttatatataaagccctt |
33302840 |
T |
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| Q |
465 |
aactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttc |
518 |
Q |
| |
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|| ||||||||| |||| |||||||| ||| ||||||| ||||||||| |
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| T |
33302839 |
cacaataggggtcattatgatgacatgcttctaacagctgaatatgtatgcttc |
33302786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 33303297 - 33303212
Alignment:
| Q |
73 |
aggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
158 |
Q |
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|||||||||||||| ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
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| T |
33303297 |
aggagtccagtgctactgttcatgggtggtggcatgggagctggaaagagcagtgttcttaaagacattcttaaagagtaagtatc |
33303212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 33251451 - 33251363
Alignment:
| Q |
70 |
gagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
158 |
Q |
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||||||| |||||| || ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
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| T |
33251451 |
gagaggaatccagttctactgttcatgggtggtggcatgggagctggaaagagcactgttcttaaagacattcttaaagagtaattatc |
33251363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 33271623 - 33271535
Alignment:
| Q |
70 |
gagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
158 |
Q |
| |
|
||||||| |||||| || ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
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| T |
33271623 |
gagaggaatccagttctactgttcatgggtggtggcatgggagctggaaagagcactgttcttaaagacattcttaaagagtaattatc |
33271535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 582 - 629
Target Start/End: Complemental strand, 33302733 - 33302686
Alignment:
| Q |
582 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatct |
629 |
Q |
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||||||||| ||||||||||| |||||||||||||||| ||||||||| |
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| T |
33302733 |
tcaaaatctgaacaggtgcataagtcttccactgatgcggcatcatct |
33302686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 33250822 - 33250773
Alignment:
| Q |
582 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctct |
631 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33250822 |
tcaaaatctgagcaggtgcatcaatcttcaactgatgctgcatcatctct |
33250773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 33270994 - 33270945
Alignment:
| Q |
582 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctct |
631 |
Q |
| |
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||||||||| | ||||||||||| ||||| |||||||||||||||||||| |
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| T |
33270994 |
tcaaaatctgagcaggtgcatcaatcttcaactgatgctgcatcatctct |
33270945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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