View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_36 (Length: 238)
Name: NF8107_low_36
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27945330 - 27945103
Alignment:
| Q |
1 |
aattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatagaactgaaatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
27945330 |
aattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcggcgatttggttgtcatcaaccgaaatagaactgaaatttg |
27945231 |
T |
|
| Q |
101 |
ccgccaccgatcgtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatcacagtcaacatg |
200 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27945230 |
ccgccaccgatcgtgcagtgtttgtcttataataagtatagtcctccactcgcatcagcccaccatatttttgaatgtactcgtgatcacagtcaacatg |
27945131 |
T |
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| Q |
201 |
ttgttgctcgctaagactcacaggttct |
228 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
27945130 |
atgttgctcgctaagactcacaagttct |
27945103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27436838 - 27436611
Alignment:
| Q |
1 |
aattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatagaactgaaatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
27436838 |
aattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcggtgatttggttgtcatcaaccgaaatagaactgaaatttg |
27436739 |
T |
|
| Q |
101 |
ccgccaccgatcgtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatcacagtcaacatg |
200 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27436738 |
ccgccaccgatcgtgcagtgtttgtcttataataagtatagtcctccactcgcatcagcccaccatatttttgaatgtactcgtgatcacagtcaacatg |
27436639 |
T |
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| Q |
201 |
ttgttgctcgctaagactcacaggttct |
228 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
27436638 |
atgttgctcgctaagactcacaagttct |
27436611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 27549400 - 27549605
Alignment:
| Q |
13 |
ttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgatc |
112 |
Q |
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|||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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| T |
27549400 |
ttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgatc |
27549499 |
T |
|
| Q |
113 |
gtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatcacagtcaacatgttgttgctcgct |
212 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||| |||||||| |||||||||||||| || || |
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| T |
27549500 |
gtgcaatgtttgtcttgtaataagtatagtcttccactcgcatgagaccaccagattttttaatgtactcatgatcacaatcaacatgttgttgatcact |
27549599 |
T |
|
| Q |
213 |
aagact |
218 |
Q |
| |
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|||||| |
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|
| T |
27549600 |
aagact |
27549605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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