View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8107_low_9 (Length: 444)
Name: NF8107_low_9
Description: NF8107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8107_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 30464533 - 30464118
Alignment:
| Q |
24 |
aataccaaacatacacttactacgaattaccagcaaaattttgaaaaattgcaatcttctattattttttattgtgtatctaccgttagggtacccgtga |
123 |
Q |
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| T |
30464533 |
aataccaaacatacacttactacgaattaccagcaaaattttgaaaaattgcaatcttctattattttttattgtgtatctaccgttagggtacccgtga |
30464434 |
T |
|
| Q |
124 |
gctctttagacaaactgagactctttgtaaagagtggtaacaaaaagacagtgacagaaccttagctaaaaagttagtactacacatgatgaactccagt |
223 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30464433 |
gctctttagacaaactgagactctttgtcaagagtggtaacaaaaagacagtgagagaaccttagctaaaaagttagtactacacatgatgaactctagc |
30464334 |
T |
|
| Q |
224 |
tacactgaatttaattaccaaatttagat-aaaccacttagcaagaataaaactctatagtttccttatttaagtataccttgacttttctcttcccttg |
322 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464333 |
tacactgaatttaattaccaaatttagataaaaccacttagcaagaataaaactctatagtttccttatttaagtataccttgacttttctcttcccttg |
30464234 |
T |
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| Q |
323 |
aggattcttagatttactcgatgatttccttc---------------cttttaacaatggattcacaaccacagattcatctcttttactcgctatctct |
407 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464233 |
aggatacttagatttactcgatgatttccttccttttccacctgcatcttttaacaatggattcacaaccacagattcatctcttttactcgctatctct |
30464134 |
T |
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| Q |
408 |
tccgagccttgacccg |
423 |
Q |
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|||||||||||||||| |
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| T |
30464133 |
tccgagccttgacccg |
30464118 |
T |
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