View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8108_high_7 (Length: 228)
Name: NF8108_high_7
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8108_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 49446349 - 49446130
Alignment:
| Q |
1 |
ggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgtggatactatgtttggtggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49446349 |
ggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgtggatactatgtttggtggtg |
49446250 |
T |
|
| Q |
101 |
gtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49446249 |
gtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctg |
49446150 |
T |
|
| Q |
201 |
cctcaaaatccttcatctca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49446149 |
cctcaaaatccttcatctca |
49446130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 17642192 - 17642084
Alignment:
| Q |
106 |
aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca |
205 |
Q |
| |
|
||||||| | |||||||||| | ||||| |||||||||||||||| | ||| | | ||| |||||||||| ||| ||| | ||||||| | || ||||| |
|
|
| T |
17642192 |
aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca |
17642093 |
T |
|
| Q |
206 |
aaatccttc |
214 |
Q |
| |
|
||||||||| |
|
|
| T |
17642092 |
aaatccttc |
17642084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University