View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8108_low_1 (Length: 442)
Name: NF8108_low_1
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8108_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Complemental strand, 51938357 - 51937935
Alignment:
| Q |
5 |
gtttcgtgtttcgtagttaatataattcacagcttaacttcaattttatttcaacatataggacatttgacagcaatgagtgatgtgtatagttttggag |
104 |
Q |
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| T |
51938357 |
gtttcttgtttcgtagttaatataattcacagcttaacttcaattttatttcaacatataggacatttgacagcaatgagtgatgtgtatagttttggag |
51938258 |
T |
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| Q |
105 |
ttgttctcttggagctattaaccggtagaaggtcagtcgacaaggtacgtccaccaagagaacagaatctagtggaatgggctagaccagtgttaaacga |
204 |
Q |
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| T |
51938257 |
ttgttctcttggagctattaaccggtagaaggtcagtcgacaaggtacgtccaccaagagaacagaatctagtggaatgggctagaccagtgttaaacga |
51938158 |
T |
|
| Q |
205 |
tgctcgtaaactttccagaataatggatccaaggcttgaaggacagtattctgagatgggagcaagaaaagcagctgcattggcttatcaatgtttaagc |
304 |
Q |
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| T |
51938157 |
tgctcgtaaactttccagaataatggatccaaggcttgaaggacagtattctgagatgggagcaagaaaagcagctgcattggcttatcaatgtttaagc |
51938058 |
T |
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| Q |
305 |
catagaccaagaaatagacctacaatgtctacggtggttaacactcttgaacctctcaaggattttgatgacattccaataggtccttttgtttacacag |
404 |
Q |
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| T |
51938057 |
catagaccaagaaatagacctacaatgtctacggtggttaacactcttgaacctctcaaggattttgatgacattccaataggtccttttgtttacacag |
51937958 |
T |
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| Q |
405 |
ttccaactgatgttagtaataat |
427 |
Q |
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| T |
51937957 |
ttccaactgatgttagtaataat |
51937935 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 415
Target Start/End: Complemental strand, 18326624 - 18326436
Alignment:
| Q |
227 |
atggatccaaggcttgaaggacagtattctgagatgggagcaagaaaagcagctgcattggcttatcaatgtttaagccatagaccaagaaatagaccta |
326 |
Q |
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| T |
18326624 |
atggatccaaaacttgaaggacaatattccgaaatgggtgctaaaaaagcagcttcattggcttatcaatgtcttagtcatagaccaaagagtaggccaa |
18326525 |
T |
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| Q |
327 |
caatgtctacggtggttaacactcttgaacctctcaaggattttgatgacattccaataggtccttttgtttacacagttccaactgat |
415 |
Q |
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| T |
18326524 |
caatgagcaatgtggttaaaattttggaacctttacaagattttgatgatattccaattggaccatttgtttacactgttccaattgat |
18326436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 7401663 - 7401719
Alignment:
| Q |
70 |
tttgacagcaatgagtgatgtgtatagttttggagttgttctcttggagctattaac |
126 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||| |
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| T |
7401663 |
tttgacaacaatgagtgatgtatatagctttggagttgttctcttagagctactaac |
7401719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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