View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8108_low_10 (Length: 241)
Name: NF8108_low_10
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8108_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36604901 - 36604677
Alignment:
| Q |
1 |
tttaagtgatttatgttttgatgtgtgaaattttcagtggaagacaannnnnnnnnnnn--gattacttatagttaaattgagctttggaataatcaatt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36604901 |
tttaagtgatttatgttttgatgtgtgaaattttcagtggaagacaattttttttttttttgattacttatagttaaatcgagctttggaataatcaatt |
36604802 |
T |
|
| Q |
99 |
ttgattcatatgaccgtatgtttgacattgaggcaaaattgtggtgaacatgccttaaaaacaggatttttatggtttctggcatggaagattccaatca |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604801 |
ttgattcatatgaccgaatgtttgacattgaggcaaaattgtggtgaacatgtcttaaaaacaggatttttatggtttctggcatggaagattccaatca |
36604702 |
T |
|
| Q |
199 |
tgcttctgttttttgtctcgtgatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36604701 |
tgcttctgttttttgtctcgtgatg |
36604677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University