View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8108_low_3 (Length: 355)
Name: NF8108_low_3
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8108_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 50324430 - 50324109
Alignment:
| Q |
18 |
acttttactgcaaaaatgaacttttctgtccatatacaccttcattcatcatgttgaaaaacaattgttaactccttttcttttaactcactaatactaa |
117 |
Q |
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| T |
50324430 |
acttttactgcaaaaatgaacttttctgtccatatacaccttcattcatcatgttgaaaaacaattgttaactccttttcttttaactcactaatactaa |
50324331 |
T |
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| Q |
118 |
caagattgtttttcagctttggaatatactaaacttatgtaannnnnnnnnnnnnnaaggaagtaaacctatgtaattacttgcacaattcctccaattt |
217 |
Q |
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| T |
50324330 |
caagattgtttttcagctttggaatatactaaacttatataaattttttttttg--aaggaagtaaacctatgtaattacttgcacaattcctccaattt |
50324233 |
T |
|
| Q |
218 |
caagtttataatactcccttctcatataacccatcattcttgaatggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50324232 |
caagtttataatactcccttctcatataacccatcattcttgaatggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacc |
50324133 |
T |
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| Q |
318 |
gccgttagattgtattgtgatgtc |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
50324132 |
gccgttagattgtattgtgatgtc |
50324109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 31857042 - 31857120
Alignment:
| Q |
263 |
ggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacagccgttagattgtattgtgatgtc |
341 |
Q |
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| T |
31857042 |
ggaaaaagatagatggtgcgaaggagacccgatgaaaaccaacgaatgtttaacagctgttagattgtattgtgatgtc |
31857120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 44494035 - 44493957
Alignment:
| Q |
263 |
ggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacagccgttagattgtattgtgatgtc |
341 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
44494035 |
ggaaaaagatagatggtgtgaaggagactcgacgaaaaccaacgaatgtttaatggccgttagattgtattgtaatgtc |
44493957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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