View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8108_low_4 (Length: 355)
Name: NF8108_low_4
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8108_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 50323773 - 50324114
Alignment:
| Q |
14 |
gagaggaaaaggagattatttccaatttaatgaagaagaaaagcttcttttgatggcagttactcaacgagaaactacttcatcaatgaagatatggttc |
113 |
Q |
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| T |
50323773 |
gagaggaaaaggagattatttccaatttaatgaagaagaaaggcttcttttgatggcagttactcaacgagaaactacttcatcaatgaagatatggttc |
50323872 |
T |
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| Q |
114 |
ttaggctcaggttgtagtaatcacatgtgtgggtataaagagtggttatgcagctatggacacttgaatgaagaatttagagcatcagcgaaattaggag |
213 |
Q |
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| T |
50323873 |
ttaggctcgggttgtagtaatcacatgtgtgggtataaagagtggttatgcagctatggacacttgaatgaagaatttagagcatcagcgaaattaggag |
50323972 |
T |
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| Q |
214 |
ataattcaagaagagacatgctatatgatgcgatagctttaacgcacgacatgcacaccataaaaaggttgcagtgtatttataattttcaaacaaacaa |
313 |
Q |
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| T |
50323973 |
ataattcaagaagagacatgctatatggtgcgacagctttaacgcacgacatgcacacgataaaaaggttgcagtgtatttataattttcaaacaaacaa |
50324072 |
T |
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| Q |
314 |
aagtagaacatggctgacctcacaatataatctgctgacatc |
355 |
Q |
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| T |
50324073 |
aagtagaacatggctgacctcacaatataatctgctgacatc |
50324114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 226 - 354
Target Start/End: Original strand, 44493833 - 44493961
Alignment:
| Q |
226 |
gagacatgctatatgatgcgatagctttaacgcacgacatgcacaccataaaaaggttgcagtgtatttataattttcaaacaaacaaaagtagaacatg |
325 |
Q |
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| T |
44493833 |
gagacgtggtatatggtgcgacaactttaacgcacgacatgcacacggtaaaaaggttgcagtgtatttataattttcaaacaaacaaaagtagaacatg |
44493932 |
T |
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| Q |
326 |
gctgacctcacaatataatctgctgacat |
354 |
Q |
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| T |
44493933 |
gctgacctcacaatacaatctgctgacat |
44493961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 31857175 - 31857103
Alignment:
| Q |
273 |
ataaaaaggttgcagtgtatttataattttcaaacaaacaaaagtagaacatggctgacctcacaatataatct |
346 |
Q |
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| T |
31857175 |
ataaaaatgttgcagtatatttataattttcaaacaaacaaaa-tagaacatggctgacatcacaatacaatct |
31857103 |
T |
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