View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8108_low_5 (Length: 347)

Name: NF8108_low_5
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8108_low_5
NF8108_low_5
[»] chr5 (4 HSPs)
chr5 (6-330)||(19975378-19975702)
chr5 (19-56)||(6392582-6392619)
chr5 (257-330)||(19620401-19620474)
chr5 (257-306)||(19977787-19977836)
[»] scaffold0110 (1 HSPs)
scaffold0110 (19-56)||(33840-33877)
[»] chr6 (2 HSPs)
chr6 (23-56)||(7785675-7785708)
chr6 (19-55)||(7351598-7351634)
[»] chr2 (2 HSPs)
chr2 (22-55)||(9214966-9214999)
chr2 (19-55)||(37419594-37419630)
[»] chr8 (2 HSPs)
chr8 (19-55)||(12361301-12361337)
chr8 (19-55)||(26499823-26499859)
[»] chr3 (1 HSPs)
chr3 (19-71)||(30657377-30657429)
[»] chr1 (1 HSPs)
chr1 (19-55)||(23373240-23373276)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 19975702 - 19975378
Alignment:
Q  6 tttggtgttatctttgacttatttgaatttatctactgatataagcactttcaa-ggttgtttggaatgtatatagaaatagtttgacnnnnnnnnnnnn 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                
T  19975702 tttggtgttatctttgacttatttgaatttatctactgatataagcactttcaaaggttgtttggaatgtatatagaaatagtttgactttatttt---- 19975607  T
Q  105 gttatagaaatagcttatattgatcaagttgattatccaaatagggcctaatagcttat---catttaaggactaattcgttttgttttcaggatttctt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  19975606 gttatagaaatagcttatattgatcaagttgattatccaaatagggcctaatagcttattatcatttaaggactaattcgttttgttttcaggatttctt 19975507  T
Q  202 tgagatttcctccttgattagttcaatttctgagaggattttaagttttgagttgaaaatgtatttggtggagagcaagggaggtgccatagggtgcatg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19975506 tgagatttcctccttgattagttcaatttctgagaggattttaagttttgagttgaaaatgtatttggtggagagcaagggaggtgccatagggtgtatg 19975407  T
Q  302 ctgttggctcttttcttcttagggacatg 330  Q
    |||||||||||||||||||||||||||||    
T  19975406 ctgttggctcttttcttcttagggacatg 19975378  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 6392582 - 6392619
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcacttt 56  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  6392582 ttgacttatttgagtttatctactaatataagcacttt 6392619  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 19620401 - 19620474
Alignment:
Q  257 aaaatgtatttggtggagagcaagggaggtgccatagggtgcatgctgttggctcttttcttcttagggacatg 330  Q
    ||||||||| |||| ||||||| ||||||||||||||  ||||||||| |  |  | |||||||||||||||||    
T  19620401 aaaatgtatatggtagagagcaggggaggtgccatagtatgcatgctggtttccttgttcttcttagggacatg 19620474  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 19977787 - 19977836
Alignment:
Q  257 aaaatgtatttggtggagagcaagggaggtgccatagggtgcatgctgtt 306  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||    
T  19977787 aaaatgtatctggtggagagcaagggtggtgccatagtatgcatgttgtt 19977836  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 33840 - 33877
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcacttt 56  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  33840 ttgacttatttgaatttatctactgacataagctcttt 33877  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 7785675 - 7785708
Alignment:
Q  23 cttatttgaatttatctactgatataagcacttt 56  Q
    |||||||||||||||||||||| |||||||||||    
T  7785675 cttatttgaatttatctactgacataagcacttt 7785708  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 7351598 - 7351634
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactt 55  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  7351598 ttgacttatttgagtttatctactgacataagcactt 7351634  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 9214999 - 9214966
Alignment:
Q  22 acttatttgaatttatctactgatataagcactt 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  9214999 acttatttgaatttatctattgatataagcactt 9214966  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 37419594 - 37419630
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactt 55  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  37419594 ttgacttatttgagtttatctacttatataagcactt 37419630  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 12361337 - 12361301
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactt 55  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  12361337 ttgacttatttgaacttatctactgatataagtactt 12361301  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26499859 - 26499823
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactt 55  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  26499859 ttgaattatttgaatttatctactgacataagcactt 26499823  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 30657429 - 30657377
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactttcaaggttgtttggaa 71  Q
    |||| |||||||| |||||||||||| |||||||||||  || ||||||||||    
T  30657429 ttgatttatttgagtttatctactgacataagcacttttgagattgtttggaa 30657377  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 23373240 - 23373276
Alignment:
Q  19 ttgacttatttgaatttatctactgatataagcactt 55  Q
    |||||||||||||| || |||||||||||||||||||    
T  23373240 ttgacttatttgaacttgtctactgatataagcactt 23373276  T

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