View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8108_low_6 (Length: 300)

Name: NF8108_low_6
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8108_low_6
NF8108_low_6
[»] chr2 (23 HSPs)
chr2 (159-285)||(16131124-16131251)
chr2 (12-162)||(16127498-16127643)
chr2 (159-269)||(28497235-28497346)
chr2 (159-269)||(27977193-27977304)
chr2 (159-269)||(28063721-28063832)
chr2 (193-269)||(22403748-22403825)
chr2 (101-162)||(16333680-16333741)
chr2 (102-162)||(40471937-40471997)
chr2 (101-162)||(16125884-16125945)
chr2 (102-162)||(37317077-37317137)
chr2 (102-162)||(41319726-41319786)
chr2 (19-65)||(16125454-16125500)
chr2 (19-65)||(16334125-16334171)
chr2 (102-156)||(42754157-42754211)
chr2 (101-162)||(7724411-7724472)
chr2 (102-162)||(6729905-6729965)
chr2 (102-162)||(10333380-10333440)
chr2 (102-162)||(31603219-31603279)
chr2 (102-162)||(41437033-41437093)
chr2 (102-162)||(5096449-5096509)
chr2 (105-161)||(7601202-7601258)
chr2 (102-162)||(20682843-20682903)
chr2 (102-162)||(25627224-25627284)
[»] scaffold0259 (1 HSPs)
scaffold0259 (157-269)||(2543-2657)
[»] chr1 (23 HSPs)
chr1 (159-269)||(13380264-13380375)
chr1 (158-267)||(31654616-31654726)
chr1 (159-250)||(51443568-51443661)
chr1 (102-162)||(8250650-8250710)
chr1 (101-162)||(31651707-31651768)
chr1 (102-162)||(5606198-5606258)
chr1 (102-162)||(10100320-10100380)
chr1 (102-162)||(23393433-23393493)
chr1 (102-156)||(2138836-2138890)
chr1 (102-160)||(8048555-8048613)
chr1 (109-162)||(1821443-1821496)
chr1 (102-162)||(45299520-45299580)
chr1 (102-161)||(5117241-5117300)
chr1 (101-162)||(38786752-38786813)
chr1 (113-162)||(43452983-43453032)
chr1 (102-162)||(10124310-10124370)
chr1 (102-162)||(26476816-26476876)
chr1 (102-162)||(28490361-28490421)
chr1 (102-162)||(29253639-29253699)
chr1 (102-162)||(41855529-41855589)
chr1 (102-162)||(44240720-44240780)
chr1 (102-162)||(44741544-44741604)
chr1 (102-162)||(48312229-48312289)
[»] chr7 (18 HSPs)
chr7 (163-269)||(8311731-8311839)
chr7 (158-269)||(13167884-13167997)
chr7 (158-269)||(9745125-9745237)
chr7 (158-269)||(10530182-10530294)
chr7 (159-269)||(29587575-29587688)
chr7 (174-258)||(46002801-46002887)
chr7 (101-162)||(48448719-48448780)
chr7 (102-162)||(16806949-16807009)
chr7 (102-162)||(28016611-28016671)
chr7 (102-162)||(36820077-36820137)
chr7 (103-162)||(18756790-18756848)
chr7 (102-149)||(29247841-29247888)
chr7 (174-267)||(31211093-31211188)
chr7 (102-156)||(40232434-40232488)
chr7 (101-162)||(38069252-38069313)
chr7 (102-154)||(26651051-26651103)
chr7 (102-162)||(32345586-32345646)
chr7 (102-162)||(35693633-35693693)
[»] chr4 (26 HSPs)
chr4 (172-269)||(31519153-31519252)
chr4 (158-269)||(3295295-3295408)
chr4 (158-263)||(41943059-41943165)
chr4 (102-162)||(3708454-3708514)
chr4 (101-161)||(17492869-17492929)
chr4 (102-162)||(28988196-28988256)
chr4 (102-162)||(29821251-29821311)
chr4 (102-162)||(37164218-37164278)
chr4 (102-162)||(46608415-46608475)
chr4 (102-162)||(48380957-48381017)
chr4 (102-161)||(2805973-2806032)
chr4 (102-161)||(4271816-4271875)
chr4 (102-157)||(39171164-39171219)
chr4 (102-156)||(31152868-31152922)
chr4 (102-162)||(1378009-1378069)
chr4 (102-162)||(23605704-23605764)
chr4 (102-162)||(28914569-28914629)
chr4 (108-160)||(37381022-37381074)
chr4 (102-162)||(39332632-39332692)
chr4 (102-162)||(43447366-43447426)
chr4 (102-156)||(48652679-48652733)
chr4 (102-162)||(8525218-8525278)
chr4 (102-162)||(10385049-10385109)
chr4 (102-162)||(40411410-40411470)
chr4 (102-162)||(50685121-50685181)
chr4 (102-162)||(55631677-55631737)
[»] chr3 (27 HSPs)
chr3 (159-269)||(40888733-40888844)
chr3 (159-269)||(15990212-15990324)
chr3 (172-269)||(52641387-52641486)
chr3 (163-269)||(29453645-29453755)
chr3 (102-162)||(29793176-29793236)
chr3 (101-162)||(42098424-42098485)
chr3 (102-162)||(14750858-14750918)
chr3 (172-266)||(19544716-19544811)
chr3 (102-162)||(29809545-29809605)
chr3 (102-161)||(9997678-9997737)
chr3 (102-161)||(10228527-10228586)
chr3 (99-162)||(28958794-28958857)
chr3 (101-162)||(900885-900946)
chr3 (101-162)||(2643067-2643128)
chr3 (101-162)||(29720596-29720657)
chr3 (102-162)||(12948241-12948301)
chr3 (102-162)||(29455506-29455566)
chr3 (102-161)||(10106182-10106241)
chr3 (192-269)||(11650602-11650680)
chr3 (102-162)||(4228986-4229046)
chr3 (102-162)||(4945649-4945709)
chr3 (102-162)||(16434655-16434715)
chr3 (102-162)||(34263502-34263562)
chr3 (102-162)||(34555352-34555412)
chr3 (102-134)||(34680411-34680443)
chr3 (102-162)||(46866544-46866604)
chr3 (102-162)||(49818958-49819018)
[»] chr8 (21 HSPs)
chr8 (158-269)||(9818219-9818331)
chr8 (159-269)||(21231891-21232002)
chr8 (159-269)||(9881088-9881200)
chr8 (101-162)||(28583101-28583162)
chr8 (158-269)||(42077513-42077625)
chr8 (102-162)||(21132728-21132788)
chr8 (102-162)||(44947206-44947266)
chr8 (102-162)||(761751-761811)
chr8 (102-162)||(11756979-11757039)
chr8 (102-162)||(14378487-14378547)
chr8 (102-162)||(44887515-44887575)
chr8 (102-161)||(38036658-38036717)
chr8 (101-162)||(14583720-14583781)
chr8 (102-162)||(8058405-8058465)
chr8 (102-162)||(29616126-29616186)
chr8 (102-162)||(38842364-38842424)
chr8 (102-162)||(44362122-44362182)
chr8 (102-156)||(30464639-30464693)
chr8 (101-162)||(11538890-11538951)
chr8 (105-162)||(23547269-23547326)
chr8 (102-162)||(4960352-4960412)
[»] scaffold0022 (1 HSPs)
scaffold0022 (159-269)||(2024-2135)
[»] scaffold0016 (1 HSPs)
scaffold0016 (158-263)||(107863-107969)
[»] chr6 (12 HSPs)
chr6 (100-162)||(2667130-2667192)
chr6 (102-162)||(35117477-35117537)
chr6 (102-162)||(2397971-2398031)
chr6 (102-162)||(6142314-6142374)
chr6 (102-162)||(16969580-16969640)
chr6 (102-156)||(995770-995824)
chr6 (102-162)||(2141769-2141829)
chr6 (102-162)||(17496135-17496195)
chr6 (102-162)||(33347944-33348004)
chr6 (105-162)||(6188466-6188523)
chr6 (102-162)||(2913098-2913158)
chr6 (102-162)||(29514834-29514894)
[»] scaffold0283 (1 HSPs)
scaffold0283 (102-162)||(3184-3244)
[»] scaffold0717 (1 HSPs)
scaffold0717 (103-163)||(4017-4077)
[»] scaffold0221 (1 HSPs)
scaffold0221 (102-162)||(5577-5637)
[»] chr5 (24 HSPs)
chr5 (102-162)||(19344502-19344562)
chr5 (102-162)||(20040218-20040278)
chr5 (102-161)||(26801904-26801963)
chr5 (102-161)||(26809454-26809513)
chr5 (102-161)||(26824481-26824540)
chr5 (102-157)||(30721488-30721543)
chr5 (102-162)||(1780948-1781008)
chr5 (102-162)||(9936691-9936751)
chr5 (102-162)||(14607361-14607421)
chr5 (102-162)||(14633208-14633268)
chr5 (197-268)||(18927183-18927255)
chr5 (102-162)||(20023061-20023121)
chr5 (102-162)||(31190980-31191040)
chr5 (101-161)||(40796874-40796934)
chr5 (102-161)||(27674419-27674478)
chr5 (109-162)||(967395-967448)
chr5 (101-162)||(1831551-1831612)
chr5 (105-162)||(34170030-34170087)
chr5 (101-162)||(40317018-40317079)
chr5 (101-161)||(1831266-1831326)
chr5 (102-162)||(14057909-14057969)
chr5 (102-162)||(27675741-27675801)
chr5 (101-161)||(40316733-40316793)
chr5 (101-161)||(41410748-41410808)
[»] scaffold0195 (1 HSPs)
scaffold0195 (102-161)||(48-107)
[»] scaffold0281 (1 HSPs)
scaffold0281 (102-162)||(13306-13366)
[»] scaffold0001 (1 HSPs)
scaffold0001 (102-162)||(184167-184227)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 16131124 - 16131251
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagact 257  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16131124 taataaaatatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcagcatcataacctatcattttcaattaaaccatggtcaagact 16131223  T
Q  258 agagcccttaccatgaatatttcctttt 285  Q
    |||||||||||| ||||||||| |||||    
T  16131224 agagcccttaccttgaatattttctttt 16131251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 16127498 - 16127643
Alignment:
Q  12 ataatactaatagacgcgttttctctttcagtagtgcaaaattaagaaagtaataattcttcggtggtacatctaaataggtactccatctactccctcc 111  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  16127498 ataatactaatagacgcgttttct-----agtagtgcaaaattaagaaagtaataattcttcggtggtacaactaaataggtactccacctactccctcc 16127592  T
Q  112 gtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
     ||||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  16127593 ctcccttaatacatgacacaattgacctaattacgcatgccaatgcataat 16127643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 28497235 - 28497346
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagact 257  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  28497235 taataaaacataataaatcttttcactcattcatgaatcaagaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtcaagact 28497334  T
Q  258 agagcccttacc 269  Q
    ||||||||||||    
T  28497335 agagcccttacc 28497346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 27977193 - 27977304
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagac 256  Q
    |||| ||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||| |||||    
T  27977193 taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggttaagac 27977291  T
Q  257 tagagcccttacc 269  Q
    |||||||||||||    
T  27977292 tagagcccttacc 27977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 28063721 - 28063832
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagac 256  Q
    |||| ||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||| |||||    
T  28063721 taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggttaagac 28063819  T
Q  257 tagagcccttacc 269  Q
    |||||||||||||    
T  28063820 tagagcccttacc 28063832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 22403825 - 22403748
Alignment:
Q  193 gaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagactagagcccttacc 269  Q
    |||||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||| ||||||||||||||||||    
T  22403825 gaatcaagaagcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacc 22403748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 16333741 - 16333680
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| ||| |||||||||| | |||||| |||||||||||||||||||||||||||    
T  16333741 ctactccctctgtctcttaatacatgagacagttgacctaattacgcataccaatgcataat 16333680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 40471997 - 40471937
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||    
T  40471997 tactccctccgtcccttaataaatgacacagttgacccaattacgcataccaatgcgtaat 40471937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 16125884 - 16125945
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| ||| |||||||||| | |||||| ||||||||||||||| |||||||||||    
T  16125884 ctactccctctgtctcttaatacatgagacagttgacctaattacgcatatcaatgcataat 16125945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 37317137 - 37317077
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| |||||||| ||   ||||||||| ||||||||||||    
T  37317137 tactccctccgtcccttaatacatgacacagttgactccattacgcattccaatgcataat 37317077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 41319726 - 41319786
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  41319726 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 41319786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 16125454 - 16125500
Alignment:
Q  19 taatagacgcgttttctctttcagtagtgcaaaattaagaaagtaat 65  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  16125454 taatagacgcgttttttctttcagtaggacaaaattaagaaagtaat 16125500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 16334171 - 16334125
Alignment:
Q  19 taatagacgcgttttctctttcagtagtgcaaaattaagaaagtaat 65  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  16334171 taatagacgcgttttttctttcagtaggacaaaattaagaaagtaat 16334125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 42754157 - 42754211
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||    
T  42754157 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatg 42754211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 7724411 - 7724472
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| |||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  7724411 ctactccctctgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 7724472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 6729905 - 6729965
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| ||||| || ||   ||||||||| ||||||||||||    
T  6729905 tactccctccgtcccttaatacatgacacacttgactccattacgcattccaatgcataat 6729965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 10333380 - 10333440
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| |||  ||||||||||||||||| ||||    
T  10333380 tactccctccgtcccttaataagtgacacagttgacccgattacgcataccaatgcgtaat 10333440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 31603219 - 31603279
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| ||||| |||||||||||| ||||    
T  31603219 tactccctccgtcccttaataagtgacacagttgacccaattaggcataccaatgcgtaat 31603279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 41437093 - 41437033
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| | |||||||||||||||| ||||    
T  41437093 tactccctccgtcccttaataagtgacacagttgacccatttacgcataccaatgcgtaat 41437033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 5096509 - 5096449
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| |   |||||||||||||||||| ||||    
T  5096509 tactccctccgtcccttaataagtgacacagttgattcaattacgcataccaatgcgtaat 5096449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 7601202 - 7601258
Alignment:
Q  105 tccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||||||||||||| | |||||||| || | |||||||||  ||||||||||    
T  7601202 tccctccgtcccttaatacttgacacagttgactttattacgcatgtcaatgcataa 7601258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 20682903 - 20682843
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||| ||   |||||||||  |||||||||||    
T  20682903 tactccctccgtcccttaataaatgacacagttgactccattacgcatttcaatgcataat 20682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 25627284 - 25627224
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||| | ||| |||| |||| |||| ||||  |||||||||||    
T  25627284 tactccctccgtcccttaatacttgacatagttgaccttattatgcatgacaatgcataat 25627224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 2543 - 2657
Alignment:
Q  157 cataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaag 254  Q
    |||||||||||| | |||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||     
T  2543 cataataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaa 2642  T
Q  255 actagagcccttacc 269  Q
    |||||||||||||||    
T  2643 actagagcccttacc 2657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 13380264 - 13380375
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagact 257  Q
    |||||||||||| |||||||||||||||||| ||||||||||||| || || |||||||| ||||||||||| ||||||| ||||| |||||||||||||    
T  13380264 taataaaacataataaatcttttcactcatccatgaatcaagaagtatatcaaattcaacgtcataacctatcattttcacttaaatcatggtcaagact 13380363  T
Q  258 agagcccttacc 269  Q
    ||| ||||||||    
T  13380364 agaacccttacc 13380375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 31654616 - 31654726
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | |||||||||||||||||| || || ||||||||||| || ||| ||||||||||| |||| ||||||| ||||| |||||||||||    
T  31654616 ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaatccaacatcataatctatcattttcatttaaa-catggtcaaga 31654714  T
Q  256 ctagagccctta 267  Q
    ||||||||||||    
T  31654715 ctagagccctta 31654726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 51443568 - 51443661
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggt 250  Q
    |||||||||||| |||||||||||||||||| | | ||||||||||||| || ||||||||||||||| |||| ||||||| | ||| ||||||    
T  51443568 taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattcaaatcatggt 51443661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 8250650 - 8250710
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||||||||||| |||||||||||||||    
T  8250650 tactccctccgtcccttaataagtgacacagttgacctaattacgtataccaatgcataat 8250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 31651707 - 31651768
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||| ||||| || |||||||| |||  ||||||||||||||||||||||    
T  31651707 ctactccctccgtcccataataaatgacacagttgaccctattacgcataccaatgcataat 31651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 5606198 - 5606258
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  5606198 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcttaat 5606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 10100320 - 10100380
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||||||||||||||| |||||| ||||    
T  10100320 tactccctccgtcccttaataagtgacacagttgacctaattacgcatatcaatgcgtaat 10100380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 23393493 - 23393433
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||| ||  |||||||||| ||||||||||||    
T  23393493 tactccctccgtcccttaataaatgacacagttgactcaattacgcatgccaatgcataat 23393433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 2138836 - 2138890
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||| ||||||  |||||||||| ||| |||||||||||||||||    
T  2138836 tactccctccgtcctttaataagtaacacagttgacccaattacgcataccaatg 2138890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 8048555 - 8048613
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcata 160  Q
    |||||||||||||||||||||||| |||||||| ||   ||||||||| ||||||||||    
T  8048555 tactccctccgtcccttaatacatgacacagttgactccattacgcattccaatgcata 8048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 1821443 - 1821496
Alignment:
Q  109 tccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||| |||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  1821443 tccgtctcttaatacatgacacagttgacccaattacgtataccaatgcataat 1821496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 45299580 - 45299520
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||| ||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  45299580 tacttcctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 45299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5117241 - 5117300
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| | || |||||||||  ||||||||||    
T  5117241 tactccctccgtcccttaatacttgacacagttgaacttattacgcatgtcaatgcataa 5117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 38786752 - 38786813
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||| |||||||| ||||| || |||  |||||||||| |||| ||||||    
T  38786752 ctactccctccgtcccataatacatgacacaattgaccctattacgcatatcaatacataat 38786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 43452983 - 43453032
Alignment:
Q  113 tcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||| | |||||||| |||| |||||||||| |||||||||||    
T  43452983 tcccttaatacttgacacagttgaccttattacgcatatcaatgcataat 43453032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 10124370 - 10124310
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||  ||||||||||| |||||| ||||    
T  10124370 tactccctccgtcccttaataagtgacacagttgactcaattacgcatatcaatgcgtaat 10124310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 26476816 - 26476876
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||| ||||||||| | |||||||| |||| |||||||||  |||| ||||||    
T  26476816 tactccctccgttccttaatacttgacacagttgaccttattacgcatgtcaatacataat 26476876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 28490421 - 28490361
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||| ||||||||  |||||||| ||   ||||||||| ||||||||||||    
T  28490421 tactccctccgtcctttaatacaggacacagttgactccattacgcattccaatgcataat 28490361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 29253699 - 29253639
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||| ||||||||||| |||||||| || | |||||||||   ||||||||||    
T  29253699 tactccctccgttccttaatacatgacacagttgacttcattacgcatttgaatgcataat 29253639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 41855529 - 41855589
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||| ||   |||||||||  |||||||||||    
T  41855529 tactccctccgtcccttaataaatgacacagttgactccattacgcatttcaatgcataat 41855589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 44240780 - 44240720
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||  ||  ||||||||||  |||||||||||    
T  44240780 tactccctccgtcccttaataaatgacacagtggactcaattacgcatttcaatgcataat 44240720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 44741604 - 44741544
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| | | ||||||||||| |||||| ||||    
T  44741604 tactccctccgtcccttaataagtgacacagttgatccaattacgcatatcaatgcgtaat 44741544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 48312289 - 48312229
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||| |||||||| |||||| |||||||||| |||| |||| ||||  |||||||||||    
T  48312289 tactccttccgtcccataatacttaacacagtttaccttattatgcatgtcaatgcataat 48312229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 8311839 - 8311731
Alignment:
Q  163 aaaacatagtaaatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagactaga 260  Q
    |||||||| ||||||||||||| |||| || ||||||||||||||||| ||||||||||||||| ||| |||||||| ||||| ||||||||||||||||    
T  8311839 aaaacataataaatcttttcacccatccatcgaatcaagaagcatgtcaaattcaacatcataatctattattttcagttaaatcatggtcaagactaga 8311740  T
Q  261 gcccttacc 269  Q
    || ||||||    
T  8311739 gcacttacc 8311731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 13167997 - 13167884
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | ||||||||||| |||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||||||||    
T  13167997 ataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatcatggtcaaga 13167898  T
Q  256 ctagagcccttacc 269  Q
    ||||||||||||||    
T  13167897 ctagagcccttacc 13167884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 9745237 - 9745125
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | ||||| |||||||||||| || |||||||||||||| || ||||||||||||||| |||| ||||||  ||||| |||||||||||    
T  9745237 ataataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaaattcaacatcataatctatcattttcctttaaa-catggtcaaga 9745139  T
Q  256 ctagagcccttacc 269  Q
    ||||||||||||||    
T  9745138 ctagagcccttacc 9745125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 10530182 - 10530294
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    |||||||||||   |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||||||||    
T  10530182 ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaaga 10530280  T
Q  256 ctagagcccttacc 269  Q
    ||||||||||||||    
T  10530281 ctagagcccttacc 10530294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 29587688 - 29587575
Alignment:
Q  159 taataaaacatagtaaatctttt-cactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    |||||||||||| |||||||||| |||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| | ||| |||||||||||    
T  29587688 taataaaacataataaatctttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattcaaatcatggtcaaga 29587589  T
Q  256 ctagagcccttacc 269  Q
    ||||||||||||||    
T  29587588 ctagagcccttacc 29587575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 46002801 - 46002887
Alignment:
Q  174 aatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagacta 258  Q
    |||||||||||||||| || |||||||||||||| || ||||||| |||| |||||| |||||||| ||||| |||| |||||||||    
T  46002801 aatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagacta 46002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 48448780 - 48448719
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||| ||||||||||||| |||||||| ||| |||||| ||||| ||||||||||    
T  48448780 ctactccctccatcccttaatacatgacacagttgacccaattacacatactaatgcataat 48448719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 16806949 - 16807009
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||| |||||||  | |||||||| ||| |||||||||||||||||||||||    
T  16806949 tactccctccgtcacttaataagtgacacagttgacccaattacgcataccaatgcataat 16807009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 28016671 - 28016611
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| |||||| |||||||| |||||||||||   ||||||||||||||||||||||    
T  28016671 tactcccttcgtcccataatacatgacacagttaactctattacgcataccaatgcataat 28016611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 36820137 - 36820077
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  36820137 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 36820077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 18756848 - 18756790
Alignment:
Q  103 actccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||| |||||||| |||||||| |||| |||||||||| |||||||||||    
T  18756848 actccctccgtcccataatacatgacacagttgacct-attacgcatatcaatgcataat 18756790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 29247888 - 29247841
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcat 149  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||    
T  29247888 tactccctccgtcccttaatacttgacacagttgaccttattacgcat 29247841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
Q  174 aatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagactagagccctta 267  Q
    ||||| ||||| ||||||| || ||||||||||| || |||| || ||||||||||| ||||||||  || | |||| ||||||||||||||||||    
T  31211188 aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactagagccctta 31211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 40232488 - 40232434
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| ||||||||||| |||||    
T  40232488 tactccctccgtcccttaataagtgacacagttgacccaattacgcatatcaatg 40232434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 38069313 - 38069252
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| |||||||||||  | |||||||| ||| ||||||||||| |||||| ||||    
T  38069313 ctactccctcagtcccttaataagtgacacagttgacccaattacgcatatcaatgcgtaat 38069252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 26651051 - 26651103
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaa 154  Q
    ||||||||||||||| ||||| || |||||||| |||  ||||||||||||||    
T  26651051 tactccctccgtcccataataaatgacacagttgaccctattacgcataccaa 26651103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 32345586 - 32345646
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||| ||||||||||||||  | |||||||| ||  |||||||||||||||||| ||||    
T  32345586 tactccatccgtcccttaataagtgacacagttgactcaattacgcataccaatgcgtaat 32345646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 35693633 - 35693693
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| ||||||||||||  | |||||||| ||| ||||||||||| |||||| ||||    
T  35693633 tactcccttcgtcccttaataagtgacacagttgacccaattacgcatatcaatgcgtaat 35693693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 31519153 - 31519252
Alignment:
Q  172 taaatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagactagagcccttacc 269  Q
    ||||||||||||||||||||| || ||||||||||| || |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  31519153 taaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttacc 31519252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 3295408 - 3295295
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | ||||||||||| |||||| || || ||||||||||| || ||||||||||||||| |||| | ||||| ||||| |||||||||||    
T  3295408 ataataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaaga 3295309  T
Q  256 ctagagcccttacc 269  Q
    ||||||| ||||||    
T  3295308 ctagagctcttacc 3295295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 263
Target Start/End: Original strand, 41943059 - 41943165
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | |||||||||||||||||| || || ||||||||||| || ||||||||| ||||| |||| ||||||| ||||| |||||||||||    
T  41943059 ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacaacataatctatcattttcatttaaa-catggtcaaga 41943157  T
Q  256 ctagagcc 263  Q
    ||||||||    
T  41943158 ctagagcc 41943165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 3708514 - 3708454
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||||||| |||||||||||||||||| ||||    
T  3708514 tactccctccgtcccttaataagtgacacagttaacccaattacgcataccaatgcgtaat 3708454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 17492929 - 17492869
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||| |||||||| | ||||||||||||| ||||| |||| ||||||||||    
T  17492929 ctactccctccgtctcttaatacttgacacagttaaccttattacacatatcaatgcataa 17492869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 28988196 - 28988256
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| |||||||| ||   ||||||||| ||||||||||||    
T  28988196 tactccctccgtcccttaatacatgacacagttgactccattacgcattccaatgcataat 28988256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 29821311 - 29821251
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||| ||||||||| |||||||| |||||||| |||  ||||||||||||||||||||||    
T  29821311 tactctctccgtcccataatacatgacacagttgaccctattacgcataccaatgcataat 29821251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 37164278 - 37164218
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||| |||||||||| |||||||| |||||||| |||  ||||||||||||||||||||||    
T  37164278 tacttcctccgtcccataatacatgacacagttgaccctattacgcataccaatgcataat 37164218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 46608475 - 46608415
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  46608475 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 46608415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 48381017 - 48380957
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  48381017 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 48380957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 2805973 - 2806032
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  2805973 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 2806032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 4271816 - 4271875
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||||||||| |||||| | |||||||| |||| ||||||||| |||||||||||    
T  4271816 tactccctccgtcccataatacttgacacagttgaccttattacgcatgccaatgcataa 4271875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 39171219 - 39171164
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgc 157  Q
    |||||||||||||||||||||  | | |||||| ||||||||||||||||||||||    
T  39171219 tactccctccgtcccttaataagtgatacagttgacctaattacgcataccaatgc 39171164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 31152922 - 31152868
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||    
T  31152922 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatg 31152868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 1378069 - 1378009
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| ||||||||||||| |||||||| ||   ||||||||| ||||||||||||    
T  1378069 tactccctccatcccttaatacatgacacagttgactccattacgcattccaatgcataat 1378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 23605704 - 23605764
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||| ||||||||| |||||||| ||   ||||||||| ||||||||||||    
T  23605704 tactccctccgtcctttaatacatgacacagttgactccattacgcattccaatgcataat 23605764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 28914629 - 28914569
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||| ||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  28914629 tactccatccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 28914569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 37381074 - 37381022
Alignment:
Q  108 ctccgtcccttaatacataacacagttaacctaattacgcataccaatgcata 160  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  37381074 ctccgccccttaatacatgacacagttgacccaattacgcataccaacgcata 37381022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 39332632 - 39332692
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||| |||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  39332632 tactccccccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 39332692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 43447426 - 43447366
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| | |||||||||||||||| ||||    
T  43447426 tactccctccgtcccttaataagtgacacagttgacccatttacgcataccaatgcgtaat 43447366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 48652733 - 48652679
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| ||||||| |||||||||    
T  48652733 tactccctccgtcccttaataagtgacacagttgacccaattacggataccaatg 48652679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 8525218 - 8525278
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||| ||||  | |||| ||| ||| |||||||||||||||||| ||||    
T  8525218 tactccctccgtccctgaataagtgacacggttgacccaattacgcataccaatgcgtaat 8525278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 10385109 - 10385049
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | ||  |||| ||| |||||||||||||||||| ||||    
T  10385109 tactccctccgtcccttaataagtgacctagttgacccaattacgcataccaatgcgtaat 10385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 40411410 - 40411470
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | | |||||| ||| | |||||||||||||||| ||||    
T  40411410 tactccctccgtcccttaataagtgatacagttgacccatttacgcataccaatgcgtaat 40411470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 50685181 - 50685121
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||| |||||||| |||||| | |||||||| |||  |||||||||||||||| |||||    
T  50685181 tactccatccgtcccataatacttgacacagttgaccctattacgcataccaatgtataat 50685121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 55631677 - 55631737
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| ||||||||||||  | |||||||| ||| ||||||| |||||||||| ||||    
T  55631677 tactcccttcgtcccttaataagtgacacagttgacccaattacgtataccaatgcgtaat 55631737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 40888733 - 40888844
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagact 257  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||| |  |||||||| |||||| |||| ||||||||||||| ||||| |||||||    
T  40888733 taataaaatataataaatcttttcactcatccatgaatcaagaagcatattaaattcaacgtcataatctatcattttcaattaaatcatggccaagact 40888832  T
Q  258 agagcccttacc 269  Q
    || |||||||||    
T  40888833 agggcccttacc 40888844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 15990212 - 15990324
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagac 256  Q
    |||||||||||| ||| |||||||||||||| || || ||||||||||| || |||||||| |||||| |||| ||||||| ||||| ||||||||||||    
T  15990212 taataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaattcaacgtcataatctatcattttcagttaaatcatggtcaagac 15990311  T
Q  257 tagagcccttacc 269  Q
    |||||||||||||    
T  15990312 tagagcccttacc 15990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 52641387 - 52641486
Alignment:
Q  172 taaatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagactagagcccttacc 269  Q
    |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||    
T  52641387 taaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttacc 52641486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 29453755 - 29453645
Alignment:
Q  163 aaaacatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcaacatcataacctat-----attttcaattaaaccatggtcaagact 257  Q
    |||||||| |||||||||||||||||| |||||||||||||||| || |||||||  |||||| ||||     ||||||| ||||| ||||||||| |||    
T  29453755 aaaacataataaatcttttcactcatccatgaatcaagaagcatatcaaattcaatgtcataatctatctatcattttcatttaaa-catggtcaaaact 29453657  T
Q  258 agagcccttacc 269  Q
    |||| |||||||    
T  29453656 agagtccttacc 29453645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 29793176 - 29793236
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| ||||||||||||  | |||||||||||| |||||||||||||||||||||||    
T  29793176 tactcccttcgtcccttaataagtgacacagttaacccaattacgcataccaatgcataat 29793236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 42098424 - 42098485
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  42098424 ctactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 42098485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 14750858 - 14750918
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| |||||||| | | | |||||||||||||||| ||||    
T  14750858 tactccctccgtcccttaatacatgacacagttgatccagttacgcataccaatgcgtaat 14750918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 19544716 - 19544811
Alignment:
Q  172 taaatcttttcactcatctat-gaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagactagagccctt 266  Q
    |||||||||||||||||| || ||||||| |||||| || |||||||||||||||||||| | ||||| ||| | |||| ||| |||||||||||||    
T  19544716 taaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcataacctatcactttcatttagatcatgatcatgactagagccctt 19544811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 29809605 - 29809545
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||| |||||||||||||||||| |||||||||||   ||||||||| ||||||||||||    
T  29809605 tactctctccgtcccttaatacatgacacagttaactccattacgcattccaatgcataat 29809545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 9997678 - 9997737
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  9997678 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 9997737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 10228527 - 10228586
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  10228527 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 10228586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 28958794 - 28958857
Alignment:
Q  99 atctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||||||| |||||||||||   |||||||||   ||||||||||    
T  28958794 atctactccctccgtcccttaatacatgacacagttaactccattacgcattttaatgcataat 28958857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 900885 - 900946
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||| ||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  900885 ctacttcctccgtcccttaataagtgacacagttgaccaaattacgcataccaatgcgtaat 900946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 2643067 - 2643128
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||||| ||| |||| ||   ||||||||| ||||||||||||    
T  2643067 ctactccctccgtcccttaatacatgacatagttgactccattacgcatgccaatgcataat 2643128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 29720657 - 29720596
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||| ||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  29720657 ctactccttccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 29720596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 12948301 - 12948241
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||| |||||||  | |||||||| | | |||||||||||||||||||||||    
T  12948301 tactccctccgtctcttaataagtgacacagttgatccaattacgcataccaatgcataat 12948241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 29455506 - 29455566
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| | |||||||||||||||| ||||    
T  29455506 tactccctccgtcccttaataagtgacacagttgacccatttacgcataccaatgcgtaat 29455566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 10106182 - 10106241
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| || | |||||||||  ||||||||||    
T  10106182 tactccctccgtcccttaatacttgacacagttgactttattacgcatgtcaatgcataa 10106241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 11650602 - 11650680
Alignment:
Q  192 tgaatcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagactagagcccttacc 269  Q
    ||||||||||||||| || ||||||| |||| |||| | |||||||  ||||| |||||| ||||||| ||||||||||    
T  11650602 tgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttacc 11650680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 4228986 - 4229046
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| ||||||||||||| |||| ||| ||   ||||||||| ||||||||||||    
T  4228986 tactccctccatcccttaatacatgacacggttgactccattacgcattccaatgcataat 4229046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 4945649 - 4945709
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| ||||| || ||   || |||||| ||||||||||||    
T  4945649 tactccctccgtcccttaatacatgacacaattgactccatcacgcattccaatgcataat 4945709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 16434655 - 16434715
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| ||||||||||||  | |||||||| ||| ||||||| |||||||||| ||||    
T  16434655 tactcccttcgtcccttaataagtgacacagttgacccaattacgtataccaatgcgtaat 16434715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 34263502 - 34263562
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | | |||||| | | |||||||||||||||||| ||||    
T  34263502 tactccctccgtcccttaataagtgatacagttgatccaattacgcataccaatgcgtaat 34263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 34555412 - 34555352
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | ||||||||  || ||||| |||||||||||| ||||    
T  34555412 tactccctccgtcccttaataagtgacacagttggcccaattatgcataccaatgcgtaat 34555352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 34680443 - 34680411
Alignment:
Q  102 tactccctccgtcccttaatacataacacagtt 134  Q
    |||||||||||||||||||||||| ||||||||    
T  34680443 tactccctccgtcccttaatacatgacacagtt 34680411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 46866604 - 46866544
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | | ||| || ||| |||||||||||||||||| ||||    
T  46866604 tactccctccgtcccttaataagtgatacaattgacccaattacgcataccaatgcgtaat 46866544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 49819018 - 49818958
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| |||||||| ||   |||| ||||  |||||||||||    
T  49819018 tactccctccgtcccttaatacatgacacagttgactccattatgcatttcaatgcataat 49818958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 9818219 - 9818331
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    |||||||||||   |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||||||||||    
T  9818219 ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaaga 9818317  T
Q  256 ctagagcccttacc 269  Q
    ||||||||||||||    
T  9818318 ctagagcccttacc 9818331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 21231891 - 21232002
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaagac 256  Q
    |||||||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||| ||||||| ||||| || |||||||||    
T  21231891 taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-cacggtcaagac 21231989  T
Q  257 tagagcccttacc 269  Q
    ||||||| |||||    
T  21231990 tagagccattacc 21232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 9881200 - 9881088
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagac 256  Q
    ||||||||||||||||||||||||||||||| | |||||| | |||||| || |||| || ||||||| ||| |||||||| | ||| |||| |||||||    
T  9881200 taataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattcaaaacatgatcaagac 9881101  T
Q  257 tagagcccttacc 269  Q
    || ||||||||||    
T  9881100 tatagcccttacc 9881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 28583101 - 28583162
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||| ||||    
T  28583101 ctactccctccgtcccttaatacatgacacagttgacccagttacgcataccaatgcgtaat 28583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 42077513 - 42077625
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||||| | |||||||||||||||||| | | ||||||||||| | || ||||||||||||||| |||| ||| ||| ||||| |||||||||||    
T  42077513 ataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaaattcaacatcataatctatcattctcatttaaa-catggtcaaga 42077611  T
Q  256 ctagagcccttacc 269  Q
    ||||| ||| ||||    
T  42077612 ctagaacccctacc 42077625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 21132728 - 21132788
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||||||||    
T  21132728 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcataat 21132788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 44947266 - 44947206
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||| |||||||| |||||||| |||  ||||||||||||||||||||||    
T  44947266 tactccctccgtcccataatacatgacacagttgaccatattacgcataccaatgcataat 44947206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 761811 - 761751
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  761811 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 11757039 - 11756979
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| |||||||| ||   ||||||||| ||||||||||||    
T  11757039 tactccctccgtcccttaatacatgacacagttgactccattacgcattccaatgcataat 11756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 14378487 - 14378547
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  14378487 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 14378547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 44887515 - 44887575
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||| ||||| || |||||||| |||  ||||||||||||||||||||||    
T  44887515 tactccctccgtcccataataaatgacacagttgaccctattacgcataccaatgcataat 44887575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 38036658 - 38036717
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  38036658 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 38036717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 14583720 - 14583781
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||||| ||| |||| ||   ||||||||| ||||||||||||    
T  14583720 ctactccctccgtcccttaatacatgacatagttgactctattacgcattccaatgcataat 14583781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 8058405 - 8058465
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| |||||| |||||| | ||||||||||||| ||||||||| ||||| ||||||    
T  8058405 tactcccttcgtcccataatacttgacacagttaaccttattacgcatgccaatacataat 8058465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 29616126 - 29616186
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||| |||||||| |||||||| | |  |||||||||||| |||||||||    
T  29616126 tactccctccgtcccataatacatgacacagttgatcctattacgcataccgatgcataat 29616186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 38842424 - 38842364
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | | |||||| ||| |||||||||||||||||| ||||    
T  38842424 tactccctccgtcccttaataagtgatacagttgacccaattacgcataccaatgcgtaat 38842364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 44362182 - 44362122
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||| ||| |||| ||   ||||||||| ||||||||||||    
T  44362182 tactccctccgtcccttaatacatgacaaagttgactccattacgcattccaatgcataat 44362122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 30464693 - 30464639
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| ||||||||||| |||||    
T  30464693 tactccctccgtcccttaataagtgacacagttgaccaaattacgcatatcaatg 30464639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 11538951 - 11538890
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||||||| ||| |||| ||   ||||| ||| ||||||||||||    
T  11538951 ctactccctccgtcccttaatacatgacatagttgactccattacacattccaatgcataat 11538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 23547326 - 23547269
Alignment:
Q  105 tccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||| ||||||||  | |||||||| || ||||||||||||||||||| ||||    
T  23547326 tccctccgttccttaataagtgacacagttgacttaattacgcataccaatgcgtaat 23547269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 4960412 - 4960352
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||| |||||||||||||||| |||||| ||   ||||||||| ||||| ||||||    
T  4960412 tactccctctgtcccttaatacataatacagttgactccattacgcattccaatacataat 4960352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 2135 - 2024
Alignment:
Q  159 taataaaacatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagac 256  Q
    |||||||||||| |||||||||||||||||| | | ||||||||||||| || ||||||||||||||| ||| | |||||| |||||  |||||||||||    
T  2135 taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctattgttttcatttaaa-tatggtcaagac 2037  T
Q  257 tagagcccttacc 269  Q
    |||||||||||||    
T  2036 tagagcccttacc 2024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 107969 - 107863
Alignment:
Q  158 ataataaaacatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcaacatcataacctat-attttcaattaaaccatggtcaaga 255  Q
    ||||||||| | | |||||||||||||||||| || || ||||| ||||| || ||||||||||||||| |||| ||||||| |||||| ||||||||||    
T  107969 ataataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcatttaaac-atggtcaaga 107871  T
Q  256 ctagagcc 263  Q
    ||||||||    
T  107870 ctagagcc 107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 2667130 - 2667192
Alignment:
Q  100 tctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||||  | |||||||| |||||||||||||||||||||| ||||    
T  2667130 tctactccctccgtcccttaataagtgacacagttgacctaattacgcataccaatgcgtaat 2667192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 35117537 - 35117477
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||| |||||||||| |||||||| ||| |||||||||||| ||||||||||    
T  35117537 tactccctccgtcacttaatacatgacacagttgacccaattacgcatactaatgcataat 35117477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2398031 - 2397971
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  2398031 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 2397971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 6142314 - 6142374
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  6142314 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 6142374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 16969640 - 16969580
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  16969640 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 16969580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 995824 - 995770
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatg 156  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||    
T  995824 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatg 995770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2141829 - 2141769
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||| ||||||| || |||||||| ||| ||||||| |||||||||| ||||    
T  2141829 tactccctccgtctcttaataaatgacacagttgacccaattacgtataccaatgcgtaat 2141769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 17496135 - 17496195
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||| ||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  17496135 tactccctccatcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 17496195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 33347944 - 33348004
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||| |||||||| |||||||||| |||||||| ||| |||||||||||  ||||||||||    
T  33347944 tacttcctccgtcacttaatacatgacacagttgacccaattacgcatattaatgcataat 33348004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 6188466 - 6188523
Alignment:
Q  105 tccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||| ||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  6188466 tccctccgttccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 6188523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2913158 - 2913098
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | ||  |||| ||| |||||||||||||||||| ||||    
T  2913158 tactccctccgtcccttaataagtgacctagttgacccaattacgcataccaatgcgtaat 2913098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 29514834 - 29514894
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | ||||| || ||| ||||||||||| |||||| ||||    
T  29514834 tactccctccgtcccttaataagtgacacaattgacccaattacgcatatcaatgcgtaat 29514894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 3244 - 3184
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||| |||||||| |||||||| |||  ||||||||||||||||||||||    
T  3244 tactccctccgtcccataatacatgacacagttgaccatattacgcataccaatgcataat 3184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 4017 - 4077
Alignment:
Q  103 actccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataata 163  Q
    |||| ||||||||| |||||||| |||||||| || | |||||||||||||||||||||||    
T  4017 actctctccgtcccataatacatgacacagttgactttattacgcataccaatgcataata 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 5637 - 5577
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  5637 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 19344502 - 19344562
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||| ||||||| || |||||||| ||| |||||||||||||||||| ||||    
T  19344502 tactccctccgtctcttaataaatgacacagttgacccaattacgcataccaatgcgtaat 19344562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 20040218 - 20040278
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  20040218 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgcgtaat 20040278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 26801904 - 26801963
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  26801904 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 26801963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 26809454 - 26809513
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  26809454 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 26809513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 26824481 - 26824540
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  26824481 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 26824540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 30721488 - 30721543
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgc 157  Q
    |||||||||||||||||||||  | |||||||| ||| ||||||||||||||||||    
T  30721488 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaatgc 30721543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 1780948 - 1781008
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||| ||||||||||| ||||    
T  1780948 tactccctccgtcccttaataagtgacacagttgacccaattactcataccaatgcgtaat 1781008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 9936691 - 9936751
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| ||||||||||| |||||| ||||    
T  9936691 tactccctccgtcccttaataagtgacacagttgacccaattacgcatatcaatgcgtaat 9936751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 14607361 - 14607421
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | |||||||| ||| |||||||||||| ||||| ||||    
T  14607361 tactccctccgtcccttaataagtgacacagttgacccaattacgcatactaatgcgtaat 14607421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 14633268 - 14633208
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||| ||||| |||||||||  | |||||||| |||||||||||||||||||||| ||||    
T  14633268 tactctctccgccccttaataagtgacacagttgacctaattacgcataccaatgcgtaat 14633208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 18927183 - 18927255
Alignment:
Q  197 caagaagcatgtcgaattcaacatcataaccta-tattttcaattaaaccatggtcaagactagagcccttac 268  Q
    |||||||||| || |||||||| |||||||||| ||||||||  ||||  ||||||||||| |||||||||||    
T  18927183 caagaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagcccttac 18927255  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 20023121 - 20023061
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||| ||||  | |||||||| ||| |||||||||||||||||| ||||    
T  20023121 tactccctccgtccctcaataagtgacacagttgacccaattacgcataccaatgcgtaat 20023061  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 31190980 - 31191040
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | | |||||| ||| |||||||||||||||||| ||||    
T  31190980 tactccctccgtcccttaataagtgatacagttgacccaattacgcataccaatgcgtaat 31191040  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 40796874 - 40796934
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||| |||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  40796874 ctactccctctgtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 40796934  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 27674478 - 27674419
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||| |||||||||||| | |||||||| |||| |||||||||  ||||||||||    
T  27674478 tactccctcggtcccttaatacttgacacagttgaccttattacgcatgtcaatgcataa 27674419  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 967448 - 967395
Alignment:
Q  109 tccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||| ||||||||  ||||||| || | ||||||||||||||||||||||    
T  967448 tccgtcccataatacatggcacagttgactttattacgcataccaatgcataat 967395  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 1831612 - 1831551
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||| ||| ||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  1831612 ctactccctccttcctttaataagtgacacagttgacccaattacgcataccaatgcgtaat 1831551  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 34170087 - 34170030
Alignment:
Q  105 tccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| |||||||| ||  |||||||||| | |||| |||||    
T  34170087 tccctccgtcccttaatacatgacacagttgactcaattacgcattctaatgtataat 34170030  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 40317079 - 40317018
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||| ||| ||||||  | |||||||| ||| |||||||||||||||||| ||||    
T  40317079 ctactccctccttcctttaataagtgacacagttgacccaattacgcataccaatgcgtaat 40317018  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 1831326 - 1831266
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||||||||||||||||| | || ||||| || | |||||||||  ||||||||||    
T  1831326 ctactccctccgtcccttaatacttgacccagttgactttattacgcatgtcaatgcataa 1831266  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 14057969 - 14057909
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||||||||||  | ||||| || ||| ||||| |||||||||||| ||||    
T  14057969 tactccctccgtcccttaataagtgacacaattgacccaattatgcataccaatgcgtaat 14057909  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 27675801 - 27675741
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||| ||   |||||||||  |||||||||||    
T  27675801 tactccctccgtcccttaataaatgacacagttgactccattacgcatttcaatgcataat 27675741  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 40316793 - 40316733
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||||||||||||||||| | || ||||| || | |||||||||  ||||||||||    
T  40316793 ctactccctccgtcccttaatacttgacccagttgactttattacgcatgtcaatgcataa 40316733  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 41410748 - 41410808
Alignment:
Q  101 ctactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    ||||||||||||||||||||||| | || ||||| || | |||||||||  ||||||||||    
T  41410748 ctactccctccgtcccttaatacttgacccagttgactttattacgcatgtcaatgcataa 41410808  T

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Target: scaffold0195 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 48 - 107
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataa 161  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||| |||||| ||||    
T  48 tactccctccgtcccttaatacttgacacagttgaccttattacgcatgccaatgtataa 107  T

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Target: scaffold0281 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 13366 - 13306
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    ||||||||||||||||||||| || |||||||||||   ||||||||| ||||| ||||||    
T  13366 tactccctccgtcccttaatatatgacacagttaactccattacgcattccaatacataat 13306  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 184227 - 184167
Alignment:
Q  102 tactccctccgtcccttaatacataacacagttaacctaattacgcataccaatgcataat 162  Q
    |||||||||||||| ||||||  | | |||||| ||| |||||||||||||||||| ||||    
T  184227 tactccctccgtcctttaataagtgatacagttgacccaattacgcataccaatgcgtaat 184167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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