View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8108_low_9 (Length: 246)

Name: NF8108_low_9
Description: NF8108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8108_low_9
NF8108_low_9
[»] chr7 (14 HSPs)
chr7 (1-239)||(2329693-2329931)
chr7 (1-239)||(2337592-2337830)
chr7 (10-239)||(2321195-2321424)
chr7 (14-239)||(1106002-1106227)
chr7 (14-239)||(1604389-1604614)
chr7 (15-239)||(1557347-1557571)
chr7 (13-239)||(1088653-1088879)
chr7 (14-239)||(1596059-1596284)
chr7 (14-239)||(1541402-1541627)
chr7 (17-239)||(1550639-1550861)
chr7 (13-239)||(3955393-3955619)
chr7 (63-239)||(9532037-9532212)
chr7 (71-239)||(30792308-30792477)
chr7 (13-83)||(3852661-3852731)
[»] scaffold0491 (2 HSPs)
scaffold0491 (14-239)||(1052-1277)
scaffold0491 (14-239)||(5939-6164)
[»] chr8 (4 HSPs)
chr8 (14-239)||(18739173-18739398)
chr8 (14-239)||(18744137-18744362)
chr8 (14-239)||(18749098-18749323)
chr8 (14-239)||(18723446-18723671)
[»] chr1 (2 HSPs)
chr1 (63-238)||(19250411-19250585)
chr1 (64-238)||(41668777-41668951)
[»] chr5 (3 HSPs)
chr5 (64-238)||(36620613-36620787)
chr5 (152-238)||(39102305-39102391)
chr5 (64-238)||(8873023-8873198)
[»] chr4 (3 HSPs)
chr4 (64-238)||(42977703-42977877)
chr4 (149-238)||(54122926-54123015)
chr4 (64-238)||(48712362-48712535)
[»] chr3 (1 HSPs)
chr3 (64-238)||(31658025-31658199)
[»] chr6 (1 HSPs)
chr6 (64-238)||(1257819-1257993)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2329931 - 2329693
Alignment:
Q  1 cacaatggcaggggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggcttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||| |    
T  2329931 cacaatggcaggggtgcaatcatgatgaagatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttca 2329832  T
Q  101 acttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacga 200  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |  ||||||||||||||||||||||    
T  2329831 ccttcatcatacaagacagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacga 2329732  T
Q  201 tatttcggtgctttatttttgataatattctcgcttcat 239  Q
    |||  ||||||||||| | ||||||||||||| ||||||    
T  2329731 tatgccggtgctttatatctgataatattctcacttcat 2329693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2337830 - 2337592
Alignment:
Q  1 cacaatggcaggggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggcttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||| |    
T  2337830 cacaatggcaggggtgcaatcatgatgaagatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttca 2337731  T
Q  101 acttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacga 200  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |  ||||||||||||||||||||||    
T  2337730 acttcatcatacaagccagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacga 2337631  T
Q  201 tatttcggtgctttatttttgataatattctcgcttcat 239  Q
    ||| |||||||||||| | |||||||||| || ||||||    
T  2337630 tatgtcggtgctttatatctgataatattttcacttcat 2337592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 2321424 - 2321195
Alignment:
Q  10 aggggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatca 109  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |   | ||||||    
T  2321424 aggggtacaatcatgatgaagatatgataggccaaaggcaacccctttaacaacattaagcctttttctccaattgaattccatggcctctgcatcatca 2321325  T
Q  110 tataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggt 209  Q
    || ||||| |||||||| || ||| |||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  2321324 tacaagacggagaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatttcggt 2321225  T
Q  210 gctttatttttgataatattctcgcttcat 239  Q
    ||||||||| ||||||||||||| ||||||    
T  2321224 gctttatttctgataatattctcacttcat 2321195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 1106227 - 1106002
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| | |   |||| |||| ||||||||||||||||||||||||  || |||||||| |    
T  1106227 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaacccttgttctccaattgaattccacggcttctacatcatcataca 1106128  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    ||| |||||||| ||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1106127 agatagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 1106028  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  1106027 tatttctgataatattctcacttcat 1106002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 1604614 - 1604389
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| | |   |||| |||||||||||| ||||||||||||||||  || |||||||| |    
T  1604614 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaaccctttttctccacttgaattccacggcttctacatcatcataca 1604515  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1604514 agacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 1604415  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| |||||||||| || ||||||    
T  1604414 tatttctgataatattttcacttcat 1604389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 1557347 - 1557571
Alignment:
Q  15 tgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataa 114  Q
    ||||||||||||||||||| |||||| |||||||||| ||||| |||   |||| |||||||||||||||||||||||| ||||  || |||||||| ||    
T  1557347 tgcaatcatgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttccacatcatcatacaa 1557446  T
Q  115 gacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgcttt 214  Q
    ||||||||||||||| |||||||||||||| |  || || ||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  1557447 gacagagaacaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatgtttgtgcttt 1557546  T
Q  215 atttttgataatattctcgcttcat 239  Q
    |||| ||||||||||||| ||||||    
T  1557547 atttctgataatattctcacttcat 1557571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 1088879 - 1088653
Alignment:
Q  13 ggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatat 112  Q
    |||||||||| |||||||||| |||||| |||||||||| ||||| |||   |||| |||||||||||||||||||||||| ||||  || ||||||||     
T  1088879 ggtgcaatcaggatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttctacatcatcatac 1088780  T
Q  113 aagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgct 212  Q
    ||||||||||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  |||||    
T  1088779 aagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgct 1088680  T
Q  213 ttatttttgataatattctcgcttcat 239  Q
    |||||| ||||||||||||| ||||||    
T  1088679 ttatttctgataatattctcacttcat 1088653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 1596284 - 1596059
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||| ||||||||||||||||| ||| |||||||||  ||||| |||   |||| |||| ||||||| ||||||||||||||||  || |||||||| |    
T  1596284 gtgcattcatgatgaagatatgaaagagcaaatgcaattcctttaacagtgttaacccttgttctccacttgaattccacggcttctacatcatcataca 1596185  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||||| ||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1596184 agacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 1596085  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  1596084 tatttctgataatattctcacttcat 1596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 1541402 - 1541627
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| |||   || | |||||| ||||| ||||||||||||||||  || |||||||| |    
T  1541402 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaacagtgttgacccttttcctccacttgaattccacggcttctacatcatcataca 1541501  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||| ||||| ||| |||||||||| |  ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  1541502 agacagagaataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatgtcggtgctt 1541601  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  1541602 tatttctgataatattctcacttcat 1541627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 1550639 - 1550861
Alignment:
Q  17 caatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataaga 116  Q
    |||||||||||||||||||| ||| |||||||||  ||||| |||    ||| |||||||||||||||||||||||| ||||  || || ||||| ||||    
T  1550639 caatcatgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccacagcttctacatcgtcatacaaga 1550738  T
Q  117 cagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttat 216  Q
    ||| ||||||||| ||| ||||||||||||  ||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  1550739 cagtgaacaagcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttat 1550838  T
Q  217 ttttgataatattctcgcttcat 239  Q
    || ||  ||||||||| ||||||    
T  1550839 ttctgtcaatattctcacttcat 1550861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 3955393 - 3955619
Alignment:
Q  13 ggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatat 112  Q
    |||| ||||||||||||||||||||||| || ||||||| ||||| |     |||| |||||| ||||||| |||||  | |||||  || |||||||      
T  3955393 ggtgaaatcatgatgaagatatgatagagcagatgcaactcctttaatggtgttaacccttttcctccaatcgaattttatggcttcgacatcatcatgc 3955492  T
Q  113 aagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgct 212  Q
    ||||| ||||||||||| ||||| ||||| ||||  ||||| |||||||| | |||||| ||||| || ||||||||||||||||| ||||||| |||||    
T  3955493 aagacggagaacaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcacaatatttctgtgct 3955592  T
Q  213 ttatttttgataatattctcgcttcat 239  Q
    |||||| |||||||||| || ||||||    
T  3955593 ttatttctgataatattttcacttcat 3955619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 9532037 - 9532212
Alignment:
Q  63 cattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacat 162  Q
    ||||||| |||||||||||||||||||||||  |||  || |||||||| || |  |||||||| || |||||||| | ||| |  ||||| ||||||||    
T  9532037 cattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacat 9532135  T
Q  163 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 239  Q
    ||||||||||| ||| || |||||||||||||| || ||||||  ||| ||||||||| ||||||||||||||||||    
T  9532136 gattcttttgtacaatcataatccataaagcttaacaatatttatgtgatttattttttataatattctcgcttcat 9532212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 30792477 - 30792308
Alignment:
Q  71 ctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttt 170  Q
    ||||||||||||||||||| |||  |||  || |||||||| || ||| ||||| |||| | |||||| | ||| |  ||||| ||||||| ||||||||    
T  30792477 ctttttctccaattgaatttcacaacttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 30792378  T
Q  171 t-gtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 239  Q
    | |||||||||||||| ||||||||| || ||||||  ||||||||||| ||||||||||||| ||||||    
T  30792377 ttgtgcaagcagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcat 30792308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 3852731 - 3852661
Alignment:
Q  13 ggtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaat 83  Q
    |||| ||||||||||||||||||||||| || ||||||| ||||| ||||  |||| ||||||||||||||    
T  3852731 ggtgaaatcatgatgaagatatgatagagcagatgcaactcctttaacaatgttaatcctttttctccaat 3852661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 1052 - 1277
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| | | |||||||||| ||||| | |   |||| |||||| ||||| |||||||||||| |||| || |||||||| |    
T  1052 gtgcaatcatgatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcataca 1151  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1152 agacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 1251  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  1252 tatttctgataatattctcacttcat 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 5939 - 6164
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| ||||||| || |||||  || |||||||| |    
T  5939 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattgcagggcttctacatcatcataca 6038  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||| ||||| ||| | |||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||    
T  6039 agacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacgatatgtttgtgctt 6138  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| || ||| |||||| ||||||    
T  6139 tatttctgttaaaattctcacttcat 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 18739173 - 18739398
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| | | |||||||||| ||||| | |   |||| |||||| ||||| |||||||||||| |||| || |||||||| |    
T  18739173 gtgcaatcatgatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcataca 18739272  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  18739273 agacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 18739372  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  18739373 tatttctgataatattctcacttcat 18739398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 18744137 - 18744362
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| | | |||||||||| ||||| | |   |||| |||||| ||||| |||||||||||| |||| || |||||||| |    
T  18744137 gtgcaatcatgatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcataca 18744236  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  18744237 agacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctt 18744336  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| ||||||||||||| ||||||    
T  18744337 tatttctgataatattctcacttcat 18744362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 18749098 - 18749323
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| |||||||||| |||||  || |||||||| |    
T  18749098 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattccatggcttctacatcatcataca 18749197  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||| ||||| ||| | |||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||    
T  18749198 agacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctt 18749297  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| || ||| |||||| ||||||    
T  18749298 tatttctgttaaaattctcacttcat 18749323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 18723446 - 18723671
Alignment:
Q  14 gtgcaatcatgatgaagatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatata 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| ||||||| || |||||  || |||||||| |    
T  18723446 gtgcaatcatgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaatttcatggcttctacatcatcataca 18723545  T
Q  114 agacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctt 213  Q
    |||||||||| ||||| ||| | |||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||    
T  18723546 agacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcactatatgtttgtgctt 18723645  T
Q  214 tatttttgataatattctcgcttcat 239  Q
    ||||| || ||| |||||| ||||||    
T  18723646 tatttctgttaaaattctcacttcat 18723671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 19250585 - 19250411
Alignment:
Q  63 cattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacat 162  Q
    ||||||| |||||||||||||||||||||||  |||  || |||||||| || || ||||||||||| | ||| || ||||| |  ||||| ||||||||    
T  19250585 cattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacat 19250487  T
Q  163 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    ||||||||||||||||||||||||||||||||| || ||||||  ||| ||||| | ||||||||||||| |||||    
T  19250486 gattcttttgtgcaagcagaatccataaagcttaacaatatttatgtgttttatatatgataatattctcacttca 19250411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 41668777 - 41668951
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcg-tagattaaaaacat 162  Q
    |||||| |||||||| |||||||||||||| ||||  |  || ||||| || || |||||||| ||  |||| | |||||| ||| ||||||||||||||    
T  41668777 attaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaactgagaacaaactttcttttttcatgta-tcgatagattaaaaacat 41668875  T
Q  163 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
     ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||| |||||||| || |||||    
T  41668876 tattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatattttcacttca 41668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 36620787 - 36620613
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| |||||||| |||||||||||||| ||||  |  || ||||| || || |||||||| ||  || | | |||||| |  |||||||||||||||    
T  36620787 attaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatagattaaaaacatg 36620688  T
Q  164 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  36620687 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 36620613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 39102305 - 39102391
Alignment:
Q  152 attaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    |||||||||||| |||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  39102305 attaaaaacatgcttcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 39102391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 8873023 - 8873198
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| |||||||| ||||||||||||||  |||  |  || ||||| || |  |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  8873023 attaagtctttttctgcaattgaattccacatcttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattaaaaacatg 8873122  T
Q  164 attcttttgtgcaagc-agaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    |||||||||||||||| | |||||||||||||| |  ||||||   |||||||||||| ||||||||||| |||||    
T  8873123 attcttttgtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatattctcacttca 8873198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 42977703 - 42977877
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| |||||||| ||||| |||||||| ||||  |  || ||||| || || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  42977703 attaagtctttttctgcaattaaattccacagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 42977802  T
Q  164 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  42977803 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 42977877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 54123015 - 54122926
Alignment:
Q  149 tagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||| | |||||||   |||||||||||| ||||||||||| |||||    
T  54123015 tagattaaaaacatgattcttttgtgcaagcaaaatatataaagcttaaagatatttatctgctttattttttataatattctcacttca 54122926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 48712362 - 48712535
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| |||||||| ||||||||||||||  |||  |  || ||||| || |  |||||||| ||  |||| | |||||| |  |||||| |||| |||    
T  48712362 attaagtctttttctgcaattgaattccacaacttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattgaaaatatg 48712461  T
Q  164 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    ||||||||||||||||| |||||||||||||| || ||||||   || ||||||||||||||||||||| |||||    
T  48712462 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctg-tttatttttgataatattctcacttca 48712535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 31658199 - 31658025
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| |||||||| ||||| ||||| || ||||  |  || |||||||| || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  31658199 attaagtctttttctgcaattaaattctacagcttctaaatcctcatataaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 31658100  T
Q  164 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  31658099 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 31658025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 1257993 - 1257819
Alignment:
Q  64 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 163  Q
    |||||| | |||||| |||||||||||| | ||||  |  || ||||| || || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  1257993 attaagtccttttctgcaattgaattcctcagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 1257894  T
Q  164 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 238  Q
    |||||||||||||| || ||| ||||||| || || ||||||   |||||||||||||||||||||||| |||||    
T  1257893 attcttttgtgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatattctcacttca 1257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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