View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_12 (Length: 428)
Name: NF8109_high_12
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 43526619 - 43526221
Alignment:
| Q |
18 |
agtttattgtctatctaccttttataattttagcttaatgtatggcaaatgtatattaaaaattaacaaacaaattattttaagaccaaagaaatacact |
117 |
Q |
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| T |
43526619 |
agtttattgtctatctaccttttataattttagcttaatgtatggcaaatgtatattaaaaattaacaaacaaattattttaagaccaaagaaatacact |
43526520 |
T |
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| Q |
118 |
tgttttctctagnnnnnnnnnnncacatgttcgtaaatattgttgtgaccaatgttttgaaaaccggaccggagatcgaactggtatgacctctggttta |
217 |
Q |
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| T |
43526519 |
tgttttctcta---aaaaaaaaacacatgttcgtaaatattgttgtgaccaatgttttgaaaaccggaccggagatcgaaccggtatgacctctggttta |
43526423 |
T |
|
| Q |
218 |
tggttcaatcgatctaaccggttgaaccgttatagaaccggttaaaccggataccatataaataactatacattagtgacattcttttggcccaaaccca |
317 |
Q |
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| T |
43526422 |
tggttcaatcgatttaaccggttgaaccgttatagaaccggttaaaccggataccatataaataactatacattagtgacattcttttggcccaaaccca |
43526323 |
T |
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| Q |
318 |
cataaactaattgaaaccctagaaacatgttgcctttttcactttacagccgcaacacgcatctcctcgtgtcttcttctctcaacattattatcttctt |
417 |
Q |
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| T |
43526322 |
cataaactagttgaaaccctagaaacatgttgcctttttcactttacagccgcaacacgtatctcctcgtgtcttcttctctcaacattattatcttctt |
43526223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 3742918 - 3742816
Alignment:
| Q |
167 |
caatgttttgaaaaccggaccggagatcgaactggtatgacctctggtttatggttcaatcgatctaaccggttgaaccgttatagaaccggttaaaccg |
266 |
Q |
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| T |
3742918 |
caatgtttttaaaaccggaccagagatcgaaccgttgtgaccttcggttcttggttcaaatggtccaaccggttaaaccattatagaaccgattaaaccg |
3742819 |
T |
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| Q |
267 |
gat |
269 |
Q |
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||| |
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| T |
3742818 |
gat |
3742816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 11342697 - 11342776
Alignment:
| Q |
167 |
caatgttttgaaaaccggaccggagatcgaactggtatgacctctggtttatggttcaatcgatctaaccggttgaaccg |
246 |
Q |
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| T |
11342697 |
caatgttttcaaaaccagaccggagatcaaacaggtgtgacctccggttcatggttcaatcggttgaaccgtttgaaccg |
11342776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 46525712 - 46525624
Alignment:
| Q |
167 |
caatgttttgaaaaccggaccggagatcgaactggtatgacctctggtttatggttcaatcgatctaaccggttgaaccgttatagaac |
255 |
Q |
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|||||||||||||| |||||| ||||| ||| |||| || ||| |||| ||||||||| | | ||| | |||||||||||||||||| |
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| T |
46525712 |
caatgttttgaaaatcggaccaaagatcaaaccggtaagatctccggttcatggttcaaccagtttaatcagttgaaccgttatagaac |
46525624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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