View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_13 (Length: 421)
Name: NF8109_high_13
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 37214230 - 37213833
Alignment:
| Q |
13 |
aaactatctctaacaggtagcatatgcattgattactgatttagagaaaagggttggaatgcagtttgagcaagctacactttctgatcttctaattcct |
112 |
Q |
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| T |
37214230 |
aaactatctctaacaggtagcatatgcattgattactgatttagagaaaagggttggaatgcagtttgagcaagctacactttctgatcttctaattcct |
37214131 |
T |
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| Q |
113 |
tgctatgagaaaagtgaaactatgtatgatgtggatcttgttcagaggttgttggagcattttcttgttcaagaacaaactgaaggttatagtccaagta |
212 |
Q |
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| T |
37214130 |
tgctatgagaaaagtgaaactatgtatgatgtggatcttgttcagaggttgttggagcattttcttgttcaagaacaaactgaaggttatagtccaagta |
37214031 |
T |
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| Q |
213 |
gacaatccctttctgatcacaagcatgtgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagaga |
312 |
Q |
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| T |
37214030 |
gacaatccctttctgatcacaagaatgtgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagaga |
37213931 |
T |
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| Q |
313 |
tagaaacctttcatcgacaaagtttcaggttcttgcagaagctttacctgagtcagctagagtttctgatgatggactatacagagcaattgattcat |
410 |
Q |
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| T |
37213930 |
tagaaacctttcatcgacaaagtttcaggttcttgcagaagctttacctgagtcagctagagtttctgatgatggactatacagagcaattgattcat |
37213833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 408
Target Start/End: Original strand, 1884948 - 1885325
Alignment:
| Q |
37 |
tgcattgattactgatttagagaaaagggttggaatgcagtttgagcaagctacactttctgatcttctaattccttgctatgagaaaagtgaaactatg |
136 |
Q |
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| T |
1884948 |
tgcattggttactgaattagagaaaagggttggaatgcaatttgagcaagctacacttgctgatctattaattccttgttataataaaggagagacaatg |
1885047 |
T |
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| Q |
137 |
---tatgatgtggatcttgttcagaggttgttggagcattttcttgttcaagaacaaactgaaggttatagtccaagtagacaatccctttctgat---c |
230 |
Q |
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| T |
1885048 |
atgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaac |
1885147 |
T |
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| Q |
231 |
acaagcatgtgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagagatagaaacctttcatcgac |
330 |
Q |
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| T |
1885148 |
atatgggattgggatgtaaccttaatgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgac |
1885247 |
T |
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| Q |
331 |
aaagtttcaggttcttgcagaagctttacctgagtcagctagagtttctgatgatggactatacagagcaattgattc |
408 |
Q |
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|||||||||||| ||||| |||||||| ||||| ||||||||| | |||||||||||| || ||||| |||||||| |
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| T |
1885248 |
aaagtttcaggtacttgctgaagctttgcctgaatcagctagaacctgtgatgatggactttatagagctattgattc |
1885325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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