View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_14 (Length: 405)
Name: NF8109_high_14
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 39521571 - 39521942
Alignment:
| Q |
18 |
atgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521571 |
atgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaatt |
39521670 |
T |
|
| Q |
118 |
atgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtg |
217 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39521671 |
atgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtg |
39521770 |
T |
|
| Q |
218 |
ttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttgg |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39521771 |
ttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttgg |
39521870 |
T |
|
| Q |
318 |
agttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcat |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39521871 |
agttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttcat |
39521942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 39544364 - 39544732
Alignment:
| Q |
18 |
atgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39544364 |
atgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaatt |
39544463 |
T |
|
| Q |
118 |
atgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
39544464 |
ttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtg |
39544563 |
T |
|
| Q |
218 |
ttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttgg |
317 |
Q |
| |
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|||||||| | ||| |||||||||||||| | |||| |||| || ||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
39544564 |
ttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttgg |
39544663 |
T |
|
| Q |
318 |
agttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcat |
389 |
Q |
| |
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|| |||| ||||| | |||| ||||||| | |||||||||||||||||||| ||||||||||||||| |
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| T |
39544664 |
ag---ctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcat |
39544732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 39576216 - 39576587
Alignment:
| Q |
18 |
atgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaatt |
117 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
39576216 |
atgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaatt |
39576315 |
T |
|
| Q |
118 |
atgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtg |
217 |
Q |
| |
|
||||||||||| |||||||||||| |||| | |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |||||| |
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|
| T |
39576316 |
atgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtg |
39576415 |
T |
|
| Q |
218 |
ttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttgg |
317 |
Q |
| |
|
|||||||| | ||| ||||| ||||| || | ||| ||||||||||||||||||||| |||||||||||||||| |||| || | ||| | ||| |
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|
| T |
39576416 |
ttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatgg |
39576515 |
T |
|
| Q |
318 |
agttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcat |
389 |
Q |
| |
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| | |||| ||||||| ||||||| |||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
39576516 |
aacttctttggctgaatgattttttagggtaagcatggtttgattcaccaatataaagattcttattttcat |
39576587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 39511328 - 39511617
Alignment:
| Q |
21 |
tttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39511328 |
tttgaggtgtgaaagtgattttgaatctttttctgatgatttgaacgtagtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttg |
39511427 |
T |
|
| Q |
121 |
taacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttg |
220 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |||||| ||||||||||| || |||||| |
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| T |
39511428 |
taacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttg |
39511527 |
T |
|
| Q |
221 |
tttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgtt |
310 |
Q |
| |
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||||| | |||||||||||| || |||| | |||| ||||||| ||||| ||||||| ||||| ||||| |||| ||||||| ||||| |
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| T |
39511528 |
tttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaaggaactgatgattgatttgtt |
39511617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 306
Target Start/End: Original strand, 39525071 - 39525356
Alignment:
| Q |
21 |
tttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatg |
120 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| || |
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|
| T |
39525071 |
tttgaggtgtgaacgtgattttgaatttttttctgatgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttg |
39525170 |
T |
|
| Q |
121 |
taacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttg |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
39525171 |
taacagaatgaaaccagggactgaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttg |
39525270 |
T |
|
| Q |
221 |
tttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgact |
306 |
Q |
| |
|
||||| ||||||||||| || || |||| | |||| | || || ||||||||||||| ||||||||||| ||||| ||||||||| |
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|
| T |
39525271 |
tttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaaggcactgatgattgact |
39525356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 113 - 289
Target Start/End: Original strand, 39580840 - 39581016
Alignment:
| Q |
113 |
aaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgt |
212 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||| |
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|
| T |
39580840 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
39580939 |
T |
|
| Q |
213 |
aagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa |
289 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| |
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| T |
39580940 |
aagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaa |
39581016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 39581037 - 39581124
Alignment:
| Q |
298 |
tgattgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttca |
388 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||| | | ||||||| |||| | |||||||||||||||||||| ||||||| ||||| |
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|
| T |
39581037 |
tgattgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttca |
39581124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39580758 - 39580816
Alignment:
| Q |
20 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttt |
78 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| |
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|
| T |
39580758 |
gtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattcttt |
39580816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 3331696 - 3331509
Alignment:
| Q |
37 |
gattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaacca |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||| |
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| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagcgtcgaaattagttaacagaaggaaaccg |
3331597 |
T |
|
| Q |
137 |
ggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttgg |
225 |
Q |
| |
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| ||| |||| | |||| ||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
3331596 |
gaaacagaaatgttgaa-tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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