View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_15 (Length: 402)
Name: NF8109_high_15
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 36605249 - 36604878
Alignment:
| Q |
18 |
atctctctgtgtgaaaaatggcgccgaataagaaatctagggtttccgatgatgaagaaattgaagatcaacctcaaaagagtctctaccaggtaccgta |
117 |
Q |
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| T |
36605249 |
atctctctgtgtgaaaaatggcgccgaataagaaatctagggtttccgatgatgaagaaattgaagatcaacctcaaaagagtctctaccaggtaccgta |
36605150 |
T |
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| Q |
118 |
aattcacgctttattatctcgcctctgcaaattttcatttcgctcttattctcagaatatttttggcgtgtgaatgtgatttatgttggttttctgttcc |
217 |
Q |
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| T |
36605149 |
aattcacgctttattatctcgcctctgcaaattttcatttcgctcttattctcagaatatttttggcgtgtgaatgtgatttatgttggttttctgttcc |
36605050 |
T |
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| Q |
218 |
acaatagtgatttgattcnnnnnnncttcgtttatatatgaccatcttgaacaaagtttgtatttgtctgtgtgtgttagggtaagggtttatcaaataa |
317 |
Q |
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| T |
36605049 |
acaatagtgatttgattctttttttcttcgtttatatatgaccatcttgaacaaagtttgtatttgtctgtgtgtgttagggtaagggtttatcaaatga |
36604950 |
T |
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| Q |
318 |
gattttcagtgatttttgtaaaatttattcctttagattgagtttgaatttaagtgatttatgttttgatgt |
389 |
Q |
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| T |
36604949 |
gattttcagtgatttttgtaaaattgattcctttagattgagtttgaatttaagtgatttatgttttgatgt |
36604878 |
T |
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