View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_21 (Length: 315)
Name: NF8109_high_21
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 71 - 293
Target Start/End: Complemental strand, 52764586 - 52764364
Alignment:
| Q |
71 |
tcttctgggtactaacaagtccattattccaacatgtttaactggtacctcaaaataggccccatattgagtacttttgagatgtcnnnnnnngtccgaa |
170 |
Q |
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| T |
52764586 |
tcttctgggtactaacaagtccattattccaacatgtttaactggtacctcaaaataggccccatattgagtacttttgagatgtctttttttgtccgaa |
52764487 |
T |
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| Q |
171 |
gttttgaattatggttcacactattcagtttcaatcaaatcaatgcttgtggaaccgtagatccggataaactctatcaatttcaatcttgaaggcttaa |
270 |
Q |
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| T |
52764486 |
gttttgaattatgtttcacactattcagtttcaatcaaatcaatgcttgtggaaccgtagatccggataaactctatcaatttgcatcttgaaggcttaa |
52764387 |
T |
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| Q |
271 |
aatcagaagtgtcttatttgttg |
293 |
Q |
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| T |
52764386 |
aatcagaagtgtcttatttgttg |
52764364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 52770536 - 52770391
Alignment:
| Q |
111 |
actggtacctcaaaataggccccatattgagtacttttgagatg---tcnnnnnnngtccgaagttttgaattatggttcacactattcagtttcaatca |
207 |
Q |
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|||||||| | ||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
52770536 |
actggtacttaaaaataggccccatactgagtacttttgagatggattttttttttgtctgaagttttgaattatgtttcacactattcagtttcaatca |
52770437 |
T |
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| Q |
208 |
aatcaatgcttgtggaaccgtagatccggataaactctatcaattt |
253 |
Q |
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| T |
52770436 |
aatcaatgcttgtggaactgtagatccggataatctttatcgattt |
52770391 |
T |
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