View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_high_23 (Length: 257)

Name: NF8109_high_23
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_high_23
NF8109_high_23
[»] chr5 (5 HSPs)
chr5 (125-257)||(24655955-24656087)
chr5 (106-218)||(29416360-29416472)
chr5 (3-113)||(24655861-24655971)
chr5 (1-69)||(29416470-29416538)
chr5 (218-251)||(29415254-29415287)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 24655955 - 24656087
Alignment:
Q  125 ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacctgtttactgttctatcagaatat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24655955 ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatcagaatat 24656054  T
Q  225 cattaacgagtaaaccctcaatttagatcactc 257  Q
    |||||||||||||||||||||||||||||||||    
T  24656055 cattaacgagtaaaccctcaatttagatcactc 24656087  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 29416472 - 29416360
Alignment:
Q  106 tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacctgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  29416472 tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt 29416373  T
Q  206 tactgttctatca 218  Q
    |||||||||||||    
T  29416372 tactgttctatca 29416360  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 24655861 - 24655971
Alignment:
Q  3 tttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgtta 102  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24655861 tttgtgtcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgtta 24655960  T
Q  103 atgtcatctgt 113  Q
    |||||||||||    
T  24655961 atgtcatctgt 24655971  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29416538 - 29416470
Alignment:
Q  1 tatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29416538 tatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca 29416470  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 29415287 - 29415254
Alignment:
Q  218 agaatatcattaacgagtaaaccctcaatttaga 251  Q
    ||||||||||||||||||||||||||||||||||    
T  29415287 agaatatcattaacgagtaaaccctcaatttaga 29415254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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