View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_high_25 (Length: 252)

Name: NF8109_high_25
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_high_25
NF8109_high_25
[»] chr2 (7 HSPs)
chr2 (17-242)||(45425237-45425461)
chr2 (81-143)||(13866967-13867029)
chr2 (83-129)||(30552576-30552622)
chr2 (74-148)||(43529772-43529846)
chr2 (86-143)||(757543-757600)
chr2 (77-146)||(14844897-14844966)
chr2 (75-147)||(3059202-3059274)
[»] chr7 (5 HSPs)
chr7 (74-143)||(23214937-23215006)
chr7 (75-143)||(1418502-1418570)
chr7 (74-143)||(31341217-31341286)
chr7 (99-147)||(529469-529517)
chr7 (114-150)||(7644219-7644255)
[»] chr5 (4 HSPs)
chr5 (74-135)||(1084066-1084127)
chr5 (75-144)||(14599290-14599359)
chr5 (81-153)||(11095404-11095476)
chr5 (74-142)||(21782576-21782644)
[»] chr4 (8 HSPs)
chr4 (74-130)||(46187841-46187897)
chr4 (75-130)||(19429402-19429457)
chr4 (86-143)||(23582384-23582441)
chr4 (80-157)||(7367959-7368036)
chr4 (86-130)||(1075552-1075596)
chr4 (75-135)||(2811554-2811614)
chr4 (75-147)||(18020042-18020114)
chr4 (87-127)||(30338550-30338590)
[»] chr8 (3 HSPs)
chr8 (80-143)||(14926901-14926964)
chr8 (76-114)||(4181516-4181554)
chr8 (80-144)||(9700089-9700153)
[»] chr3 (9 HSPs)
chr3 (74-144)||(49845458-49845528)
chr3 (74-130)||(22667485-22667541)
chr3 (74-130)||(22724124-22724180)
chr3 (75-130)||(27795945-27796000)
chr3 (81-127)||(30321953-30321999)
chr3 (74-135)||(29600662-29600723)
chr3 (112-149)||(33120256-33120293)
chr3 (99-144)||(45541678-45541723)
chr3 (74-146)||(11041142-11041214)
[»] chr6 (4 HSPs)
chr6 (80-135)||(32171642-32171697)
chr6 (85-130)||(6963011-6963056)
chr6 (80-148)||(10016711-10016779)
chr6 (82-130)||(24811010-24811058)
[»] scaffold0459 (1 HSPs)
scaffold0459 (74-143)||(6628-6697)
[»] scaffold0366 (1 HSPs)
scaffold0366 (74-143)||(6626-6695)
[»] chr1 (3 HSPs)
chr1 (81-130)||(31517672-31517721)
chr1 (86-147)||(37593599-37593660)
chr1 (80-148)||(25719759-25719827)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 45425237 - 45425461
Alignment:
Q  17 acatgttatatgttatttgcatatgttaagagtctcacatgtgggactctttaaaagcataaactctctcaaacagtttcataagtgtttatcccagtaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45425237 acatgttatatgttatttgcatatgttaagagtctcacatgtgggactctt-aaaagcataaactctctcaaacagtttcataagtgtttatcccagtaa 45425335  T
Q  117 ataagctcaaataactcaacccaaacagaccttaagtcattttcaataggataccattagaatcctatgttggatgttagtggagaaaattgacatgtta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45425336 ataagctcaaataactcaacccaaacagaccttaagtcattttcaataggataccattagaatcctatgttggatgttagtggagaaaattgacatgtta 45425435  T
Q  217 cattaaatttatcatttgtttctctg 242  Q
    ||||| ||| ||||||||||||||||    
T  45425436 cattatattgatcatttgtttctctg 45425461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 13866967 - 13867029
Alignment:
Q  81 tctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    ||||||||||||| ||| ||||||||||  ||||| |||||||||||||  |||| |||||||    
T  13866967 tctctcaaacagtctcacaagtgtttatggcagtagataagctcaaataggtcaatccaaaca 13867029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 30552622 - 30552576
Alignment:
Q  83 tctcaaacagtttcataagtgtttatcccagtaaataagctcaaata 129  Q
    ||||||||||||||| ||||| |||| |||||| |||||||||||||    
T  30552622 tctcaaacagtttcaaaagtgcttataccagtagataagctcaaata 30552576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 43529846 - 43529772
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacct 148  Q
    |||||| |||| |||||||| ||| ||||| |||| ||| || |||||||||||||| ||||  |||||||||||    
T  43529846 cataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtcaattcaaacagacct 43529772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 757543 - 757600
Alignment:
Q  86 caaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    |||||||| |||||||| ||||| | ||||||||||||||||||   |||||||||||    
T  757543 caaacagtctcataagtatttatgctagtaaataagctcaaatatgccaacccaaaca 757600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 14844966 - 14844897
Alignment:
Q  77 aaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagac 146  Q
    ||||||| || |||||||||| ||||| |||| ||| || ||||  |||||||| |||||||||||||||    
T  14844966 aaactctatcgaacagtttcacaagtgcttatgccaatagataacttcaaataagtcaacccaaacagac 14844897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 3059274 - 3059202
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacc 147  Q
    |||| ||||| ||||||||||| |||||||||||    |||||||| ||||||||| || | |||||||||||    
T  3059274 ataagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacc 3059202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 23214937 - 23215006
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    |||||| ||||||||||||| |||||||||||||| | |||| ||||| |||||||| |||| |||||||    
T  23214937 cataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 1418502 - 1418570
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    |||| ||||| |||||||  ||||||||| |||| |||||| |||||||||||||| |||| |||||||    
T  1418502 ataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 31341217 - 31341286
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    ||||||||||| |||||||| | | |||||||||| | |||| | |||||||||||| |||| |||||||    
T  31341217 cataaactctcccaaacagtcttaaaagtgtttatgcaagtagaaaagctcaaataagtcaatccaaaca 31341286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 529469 - 529517
Alignment:
Q  99 aagtgtttatcccagtaaataagctcaaataactcaacccaaacagacc 147  Q
    |||||||||| |||||| |||||||||||||| |||| |||| ||||||    
T  529469 aagtgtttatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 7644255 - 7644219
Alignment:
Q  114 taaataagctcaaataactcaacccaaacagacctta 150  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  7644255 taaataagctcaaataagtcaatccaaacagacctta 7644219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 1084127 - 1084066
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaa 135  Q
    |||||||||||||||||||||||| ||||| ||||  |||||||||| ||||||||| ||||    
T  1084127 cataaactctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataagtcaa 1084066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 14599359 - 14599290
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacag 144  Q
    |||| |||||||||||| | | | |||||||||| | |||||||||| |||||||||| || ||||||||    
T  14599359 ataagctctctcaaacaatcttacaagtgtttatgctagtaaataagttcaaataactgaatccaaacag 14599290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 11095476 - 11095404
Alignment:
Q  81 tctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagaccttaagt 153  Q
    ||||||||||| | ||| ||||||||||  ||||| ||||||| ||||||  ||  |||||||||||||||||    
T  11095476 tctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataaaccagtccaaacagaccttaagt 11095404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 21782644 - 21782576
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaac 142  Q
    ||||| |||||||||||||  ||| |||||||||| |||||| ||||  |||||||| |||| ||||||    
T  21782644 cataagctctctcaaacagcctcacaagtgtttatgccagtagataatttcaaataagtcaagccaaac 21782576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 46187897 - 46187841
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    ||||||| |||| ||||||| |||||||||||||| |||||| ||||||||||||||    
T  46187897 cataaaccctcttaaacagtctcataagtgtttatgccagtagataagctcaaataa 46187841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 19429457 - 19429402
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||| ||||| |||||||| ||| |||||||||| |||||||||||||||||||||    
T  19429457 ataagctctcccaaacagtctcacaagtgtttataccagtaaataagctcaaataa 19429402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 23582441 - 23582384
Alignment:
Q  86 caaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    |||||||| ||||||||| |||| ||| ||||||||||||||||| |||| |||||||    
T  23582441 caaacagtctcataagtgattataccaataaataagctcaaataagtcaatccaaaca 23582384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 7368036 - 7367959
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagaccttaagtcatt 157  Q
    ||||| |||||||| ||| ||| |||||| || ||| |||| ||||||||| |||| ||||||||||| ||| |||||    
T  7368036 ctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagaccctaattcatt 7367959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1075552 - 1075596
Alignment:
Q  86 caaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    ||||| |||||| |||||||||| |||||| ||||||||||||||    
T  1075552 caaactgtttcacaagtgtttatgccagtagataagctcaaataa 1075596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 2811554 - 2811614
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaa 135  Q
    |||| |||||||||||||| |||||| || |||| |||||| |||| ||||||||| ||||    
T  2811554 ataatctctctcaaacagtctcataaatgcttatgccagtagataacctcaaataagtcaa 2811614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 18020042 - 18020114
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacc 147  Q
    |||| ||||| ||||||||||| |||||||||||    |||||||| ||||||||| || | |||||||||||    
T  18020042 ataagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacc 18020114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 30338590 - 30338550
Alignment:
Q  87 aaacagtttcataagtgtttatcccagtaaataagctcaaa 127  Q
    ||||||| ||| ||||||||||||||||| |||||||||||    
T  30338590 aaacagtctcacaagtgtttatcccagtagataagctcaaa 30338550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 14926964 - 14926901
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    |||||||||||||| ||| ||||| |||| |||||||||||| |||||||| |||| |||||||    
T  14926964 ctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 4181554 - 4181516
Alignment:
Q  76 taaactctctcaaacagtttcataagtgtttatcccagt 114  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  4181554 taaactctctcaaacagtctcataagtgtttatgccagt 4181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 9700089 - 9700153
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacag 144  Q
    |||||||||| ||| ||| |||||||||| | |||| |||||||||||||| | || ||||||||    
T  9700089 ctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacag 9700153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 49845528 - 49845458
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacag 144  Q
    ||||| ||||| |||| |||||||||||| ||||| | |||| |||||||||||||| |||| ||||||||    
T  49845528 cataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacag 49845458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 22667485 - 22667541
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||||||||||||||||||| ||| ||||| ||||  ||||| ||||||||||||||    
T  22667485 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22667541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 22724124 - 22724180
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||||||||||||||||||| ||| ||||| ||||  ||||| ||||||||||||||    
T  22724124 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22724180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 27796000 - 27795945
Alignment:
Q  75 ataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||| |||||| ||||||||||| ||||| |||| |||||| ||||||||||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataagctcaaataa 27795945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 30321999 - 30321953
Alignment:
Q  81 tctctcaaacagtttcataagtgtttatcccagtaaataagctcaaa 127  Q
    |||| |||||||||||||| ||||||||  |||||||||||||||||    
T  30321999 tctcccaaacagtttcataggtgtttatgtcagtaaataagctcaaa 30321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 29600723 - 29600662
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaa 135  Q
    |||||||||||||||||| | | |||| |||| || ||||||||||| ||||||||| ||||    
T  29600723 cataaactctctcaaacaatctaataactgttcatgccagtaaataaactcaaataagtcaa 29600662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 33120256 - 33120293
Alignment:
Q  112 agtaaataagctcaaataactcaacccaaacagacctt 149  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  33120256 agtagataagctcaaataaatcaacccaaacagacctt 33120293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 45541678 - 45541723
Alignment:
Q  99 aagtgtttatcccagtaaataagctcaaataactcaacccaaacag 144  Q
    |||||||||| ||| ||||||||||||||||| |||| ||||||||    
T  45541678 aagtgtttataccattaaataagctcaaataagtcaatccaaacag 45541723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 11041214 - 11041142
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagac 146  Q
    ||||| ||||||||||||||  || ||||| |||||  |||| |||||||||||| |||||| ||| ||||||    
T  11041214 cataagctctctcaaacagtcccacaagtgcttatcttagtagataagctcaaatgactcaatccatacagac 11041142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 32171642 - 32171697
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaa 135  Q
    |||||||||||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  32171642 ctctctcaaacagtgtcagaagtggttatgccagtaaataagctcgaataaatcaa 32171697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 6963056 - 6963011
Alignment:
Q  85 tcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    ||||||||||||| |||||| ||| |||||||||||||| ||||||    
T  6963056 tcaaacagtttcacaagtgtgtatgccagtaaataagcttaaataa 6963011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 10016711 - 10016779
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacct 148  Q
    |||||| ||| ||| ||| |||||||||| || ||| ||||||||||||||  ||| ||||||||||||    
T  10016711 ctctctgaaatagtctcacaagtgtttatgcctgtagataagctcaaataaaccaatccaaacagacct 10016779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 24811058 - 24811010
Alignment:
Q  82 ctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||||||||| | |||||||||||||| ||| || ||||||||||||||    
T  24811058 ctctcaaacattatcataagtgtttatgccaatagataagctcaaataa 24811010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 6628 - 6697
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    ||||| ||||||||||| || ||| ||||| |||| ||| || |||||||||||||| |||| |||||||    
T  6628 cataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaaca 6697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 6626 - 6695
Alignment:
Q  74 cataaactctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaaca 143  Q
    ||||| ||||||||||| || ||| ||||| |||| ||| || |||||||||||||| |||| |||||||    
T  6626 cataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaaca 6695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 31517721 - 31517672
Alignment:
Q  81 tctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataa 130  Q
    |||| |||||||| ||| ||||| |||| |||||||||||||||||||||    
T  31517721 tctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 37593660 - 37593599
Alignment:
Q  86 caaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacc 147  Q
    |||||||| | | |||||||||| |||||| |||||||||||||| ||||  ||||||||||    
T  37593660 caaacagtctaacaagtgtttatgccagtatataagctcaaataagtcaaatcaaacagacc 37593599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 25719759 - 25719827
Alignment:
Q  80 ctctctcaaacagtttcataagtgtttatcccagtaaataagctcaaataactcaacccaaacagacct 148  Q
    ||||| |||| ||| |||||| || |||  ||||||||||| ||||||||| |||| ||||||||||||    
T  25719759 ctctcccaaagagtctcataaatgcttaagccagtaaataaactcaaataaatcaatccaaacagacct 25719827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University