View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_38 (Length: 220)
Name: NF8109_high_38
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 11488867 - 11489040
Alignment:
| Q |
21 |
gattcttcttgtaaaaatgtttatat---ttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttcttcaaa |
117 |
Q |
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| T |
11488867 |
gattcttcttgtaaaaatgtttatataatttgttaaatattcttattcctatatacatttgttgaatagagttttacatacagtatctcctttcttcaaa |
11488966 |
T |
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| Q |
118 |
atccaaaagttaatcctggttgagagcttaagg-taagttttcttctaatattggtgaaaattgtgtattttgc |
190 |
Q |
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| T |
11488967 |
atgctgaagttaatcctggttgagagcttaaggttaagttttgttctaatattgatgaaaattgtatattttgc |
11489040 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 9842631 - 9842699
Alignment:
| Q |
40 |
tttatatttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttct |
112 |
Q |
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| T |
9842631 |
tttatctttgttaaaaattcttgttcctataaacatttgttgaatag----ttacatacagtacgtcctttct |
9842699 |
T |
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