View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_6 (Length: 504)
Name: NF8109_high_6
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 36 - 497
Target Start/End: Original strand, 35318167 - 35318628
Alignment:
| Q |
36 |
gttcctcattaattaattctactgtctaaatctcatcttcctcttcacagttcacactcaattgttacttcaattctcaccgtaaagacagataaacata |
135 |
Q |
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| T |
35318167 |
gttcctcattaattaattctactgtctaaatctcatcttcctcttcacagttcacactcaattgttacttcaattctcaccgtaaagacagataaacata |
35318266 |
T |
|
| Q |
136 |
ttcattaatctcaccgtcacattaattaattcctttgattttatatttttgttaatttgtgatgtacttttgaaatatttcatgtcatgtgtgatgtact |
235 |
Q |
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| T |
35318267 |
ttcattaatctcaccgtcacattaattaattcctttgattttatttttttgttaatttgtgatgtacttttgaaatatttcatgtcatgtgtgatgtact |
35318366 |
T |
|
| Q |
236 |
ggaaggaaattagaggaaaagagaaatgacagttttctcgatttggtgttctttcacccactagaatgagtttctaaatttagatcataaatcaatctag |
335 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35318367 |
ggaaggaaattagaggaaaagagacatgacagttttctcgatttggtgttctttcacccactagaatgagtttctaaatttagatcataaatcaatctag |
35318466 |
T |
|
| Q |
336 |
tcttgtcttctaacacagtcagctagtgcacgaaatctttctttcccaaatacattcactttcctcatttggtcttaaagaagaaaagggtccatttatg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35318467 |
tcttgtcttctaacacagtcagctagtgcacgaaatctttctttcccaaatacattcactttcctcatttggtcttaaagaagaaaagggtccatttatg |
35318566 |
T |
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| Q |
436 |
tctaactccctttcatttaccaaatcaggataactaaaccactcactttcttctctctgctt |
497 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
35318567 |
tctaactccctttcatttaccaaatgaggataactaaaccacttactttcttctctttgctt |
35318628 |
T |
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