View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_7 (Length: 468)
Name: NF8109_high_7
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Complemental strand, 7897072 - 7896631
Alignment:
| Q |
12 |
agagaaaaatggaatttattctgtgaaaagtgcgtatagattgtgtgtacaggagctgattgatgtttcgcacttgcggcctccgggcaattggaatgtc |
111 |
Q |
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| T |
7897072 |
agagaaaaatggaatttattctgtgaaaagtgcgtataggttgtgtgtacaggagctgattgatgtttcgcacttgcggcgtccgggcaattggaatgtc |
7896973 |
T |
|
| Q |
112 |
atatggaatttaaaggctccaccaaaaattcaaaactttctttggcgcatatgtaggggctgcttaccaacctgagctcgattacagtctaaaggggttg |
211 |
Q |
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| T |
7896972 |
atatggaatttaaaggctccaccaaaaattcaaaactttctttggcacgtatgtaggggctgcttaccaaccagagctcaattacagtctaaaggggttg |
7896873 |
T |
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| Q |
212 |
aatgtccagtcaattgtgtgagttgtaatgcaatggtggaggacttggctcatgnnnnnnnccactgtccttttgcagttcaaacttggcaagtagcagg |
311 |
Q |
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| T |
7896872 |
aatgtccagtcaattgtgtgagttgtaatgcaatggtggaggacttggctcatgtttttttccactgtccttttgcagttcaaacttggcaagtagcagg |
7896773 |
T |
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| Q |
312 |
tttgtggcatactgtcatgacagaaatccagcaaagcatctcagctgaagctgctattttctcccttcttcagacgttgcacaatgagttacaacaaagg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
7896772 |
tttgtggcatactgtcatgacagaaatccagcaaagcatctcagctgaagctgctattttctcccttcttcagactttacacaatgagttacaacaaagg |
7896673 |
T |
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| Q |
412 |
tttgcggccgttttatggagtttatggaagcaccgtaataac |
453 |
Q |
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| T |
7896672 |
tttgcggccgttttatggagtttatggaagcaccgcaataac |
7896631 |
T |
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