View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_high_9 (Length: 464)
Name: NF8109_high_9
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 34975479 - 34975921
Alignment:
| Q |
10 |
atgagatgaatctttttaatttaacgaaggttcttggtttgaatctaatcttgtacatgcaacaatgttaaaacttgggagagtttgtcgtccatttaag |
109 |
Q |
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| T |
34975479 |
atgacatgaatctttttaatttaacgaaggttctcggtttgaattcagtcttgtacatgcaacaatgttaaaacttgggagagtttatcgtacatttaag |
34975578 |
T |
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| Q |
110 |
ttgtataagattcgaaggattaatctctattgcatgctggaagattttcgtgatgagaacaaagagaaaaattcctagacgcggaataaaatggggatgg |
209 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34975579 |
ttgtataagattcgaaggattaatctatgttgcatgctggaagattttcgtgatgagaacaaggagaaaaattcctagacgcggaataaaatggggatgg |
34975678 |
T |
|
| Q |
210 |
agaacattttagtgatgaagtgatgtaatcaaacatttgatcaattgcttaaagtgtttggtttctaaatcttccaaaaataactacatgttgatctttc |
309 |
Q |
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| T |
34975679 |
agaacattttagtgatgatgtgatgtaatcaaacatttgatcaattgcttaaagtgtttggtttctaaatcttccaaaaataacttcatgttgatctttc |
34975778 |
T |
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| Q |
310 |
acctgataa---------tggcccagcagccttgccccacaaaacctacttcaaaagttgtaattaactaatctttcattagaaactagatattaacaac |
400 |
Q |
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| T |
34975779 |
acctgataatttaactattggcccagcagccttgccccacaaaacctacttcaaaagttgtaattaactaatctttcattagaaactagatattaacaac |
34975878 |
T |
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| Q |
401 |
tgtcttttcttatttaatgaatgaaattagagaatgtagggta |
443 |
Q |
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| T |
34975879 |
tgtcttttcttatttaatgaatgaaattagagaatgtagggta |
34975921 |
T |
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